Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003995`

染色体: Chr07 坐标: 51002214-51004776 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003995`
名称	SmilChr07G003995
描述	F-box/LRR-repeat protein At3g26922-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	51002214 - 51004776 / `-`

ID 对照

NCBI Gene ID	`LOC130994684`
GeneID	`130994684`
locus_tag	`-`
NCBI Name	`LOC130994684`
原始查询	`LOC130994684`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/LRR-repeat protein At3g26922-like
产物	F-box/LRR-repeat protein At3g26922-like
Arabidopsis	`AT3G52680` (AT3G52680) F-box/RNI-like/FBD-like domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:824434] identity=30.8; qcov=0.789; evalue=5.23e-26; confidence=low
Rice	`Os08g0197000` (OsFbox420) - identity=33.3; qcov=0.299; evalue=3.4e-11; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF24758 (LRR_At5g56370)
InterPro	-
eggNOG	-
NR	GeneID:130994684

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057775735.1`
2	Chromosome	染色体	0.00000	`XP_057775735.1`
3	Centromere	着丝粒	0.00000	`XP_057775735.1`
4	Chromatin	染色质	0.00000	`XP_057775735.1`
5	Telomere	端粒	0.00000	`XP_057775735.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:51002500`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B49,B79,C20,C27,C36
`Chr7:51002543`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B138,B85,C13
`Chr7:51002562`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B122,B26
`Chr7:51002581`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B28,B98
`Chr7:51002596`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B115,B14,B63,B99,C19
`Chr7:51002627`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A23,B59
`Chr7:51002650`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B113,B83,C18,C83
`Chr7:51002681`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B113,B40,B83,B96,C18
`Chr7:51002702`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B67,C18,C70,C71
`Chr7:51002719`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C51,D11
`Chr7:51002890`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B134,C80
`Chr7:51003169`	`TC`	`T`	1bp_deletion	frameshift_variant	2	B27,C20

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775735.1

432 aa

216

432

F-box

LRR_At5g56370

PF00646 F-box 10-50 aa PF24758 LRR_At5g56370 87-233 aa

XP_057775736.1

432 aa

216

432

F-box

LRR_At5g56370

PF00646 F-box 10-50 aa PF24758 LRR_At5g56370 87-233 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775735.1`	Pfam	`PF00646`	F-box	Domain	10	50	1.5e-08	34.9	F-box domain
`XP_057775735.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	87	233	4.1e-10	40.4	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057775736.1`	Pfam	`PF00646`	F-box	Domain	10	50	1.5e-08	34.9	F-box domain
`XP_057775736.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	87	233	4.1e-10	40.4	FBD-associated F-box protein At5g56370, LRR repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057919752.1
CATTTTCATCTTTTGTTGGTTTTATCTTTTTCCATTTTGAGATTGTCTACATTTTCATCTTTCGTTGGTTTTATCTTTTTCCAAGAGCATGCGTTTTCGGGGAATCAAGACTTTCAATTCTTGCTGCTTTTTTCTGAAAAAAATAACTTCCCCTATATGTTAATCTTTGAATTTGATTAGGGTTTTTGTTACCAAGAAAAGTTTTGGAGGCGTTTGGTCTGCCAAAGAGTGTTTTAATTTCTGTAGAGTTTTGGTGATAA...

XM_057919753.1
ATTTTCATCTTTTGTTGGTTTTATCTTTTTCCATTTTGAGATTGTCTACATTTTCATCTTTCGTTGGTTTTATCTTTTTCCAAGAGCATGCGTTTTCGGGGAATCAAGACTTTCAATTCTTGCTGCTTTTTTCTGAAAAAAATAACTTCCCCTATATGTTAATCTTTGAATTTGATTAGGGTTTTTGTTACCAAGAAAAGTTTTGGAGGCGTTTGGTCTGCCAAAGAGTGTTTTAATTTCTGTAGAGTTTTGGTGATAAA...

CDS

2 records

下载 CDS FASTA

LOC130994684
ATGGATTCCTGGCATCACCCTGATCGACTAAGTGAGTTACCCGACTCTTTAATCCTCATGATTCTTTCACTGTTGGAGACACGGTATGTTGTTAGGACAACGCTACTCTCCAAACGTTGGAGAGATCTTTGGACCACCGTTCCCCGCCTAAAATTTGTACGTGATGATCGACGTTTCATTTGCGGAGTTCTTGCACAATGGAGAGGTGAGAAGATCATAAGCTTCTACCTTTCTTTGGTCTTTTCGACTCCTAGTGATCT...

Protein

2 records

下载 Protein FASTA

XP_057775735.1
MDSWHHPDRLSELPDSLILMILSLLETRYVVRTTLLSKRWRDLWTTVPRLKFVRDDRRFICGVLAQWRGEKIISFYLSLVFSTPSDLDLWLLFAVERQVEELHIDFGPYSNAQYYPPQRLYPCSSITELHLGSCCLLEIEGSVQWNRLKSLWIEVPDSSCDDAIKKILLGAPRLEKMILFIGKINENLSIRSTSLKKLIIRSHWNENADIMAMLRIWAPNLLTLRIWRANVVNGGSCLFDVPSLIEASISGFCDVYDPPL...

XP_057775736.1
MDSWHHPDRLSELPDSLILMILSLLETRYVVRTTLLSKRWRDLWTTVPRLKFVRDDRRFICGVLAQWRGEKIISFYLSLVFSTPSDLDLWLLFAVERQVEELHIDFGPYSNAQYYPPQRLYPCSSITELHLGSCCLLEIEGSVQWNRLKSLWIEVPDSSCDDAIKKILLGAPRLEKMILFIGKINENLSIRSTSLKKLIIRSHWNENADIMAMLRIWAPNLLTLRIWRANVVNGGSCLFDVPSLIEASISGFCDVYDPPL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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