当前解析结果
SmilChr07G004003| 统一新 Gene ID | SmilChr07G004003 |
|---|---|
| 名称 | SmilChr07G004003 |
| 描述 | replication factor C subunit 2 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 51097361 - 51100742 / - |
| NCBI Gene ID | LOC130994691 |
|---|---|
| GeneID | 130994691 |
| locus_tag | - |
| NCBI Name | LOC130994691 |
| 原始查询 | LOC130994691 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | replication factor C subunit 2 |
| 产物 | replication factor C subunit 2 |
| Arabidopsis | AT1G63160 (RFC2)replication factor C 2 [Source:NCBI gene (formerly Entrezgene);Acc:842620] identity=90.2; qcov=0.961; evalue=0; confidence=high |
| Rice | Os04g0569000 (RFC4)- identity=86.8; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0003689 (DNA clamp loader activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005663 (DNA replication factor C complex); GO:0006261 (DNA-templated DNA replication); GO:0006281 (DNA repair); GO:0016887 (ATP hydrolysis activity) |
| KEGG | smil03030 (DNA replication - Salvia miltiorrhiza (redroot sage)); smil03410 (Base excision repair - Salvia miltiorrhiza (redroot sage)); smil03420 (Nucleotide excision repair - Salvia miltiorrhiza (redroot sage)); smil03430 (Mismatch repair - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00004 (AAA); PF01078 (Mg_chelatase); PF01443 (Viral_helicase1); PF08542 (Rep_fac_C); PF13173 (AAA_14); PF13177 (DNA_pol3_delta2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994691 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057775744.1 |
| 2 | Nucleoplasm | 核质 | 0.40000 | XP_057775744.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057775744.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057775744.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775744.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:51097588 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:51097595 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A14,A8,B3,B81 |
Chr7:51097661 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B128 |
Chr7:51097671 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr7:51099007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775744.1PF01078
Mg_chelatase 24-83 aa
PF13173
AAA_14 47-143 aa
PF00004
AAA 48-165 aa
PF01443
Viral_helicase1 49-129 aa
PF13177
DNA_pol3_delta2 89-169 aa
PF08542
Rep_fac_C 234-319 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775744.1 |
Pfam | PF01078 |
Mg_chelatase | Domain | 24 | 83 | 1.7e-05 | 25.1 | Magnesium chelatase, subunit ChlI |
XP_057775744.1 |
Pfam | PF13173 |
AAA_14 | Family | 47 | 143 | 2.6e-06 | 28.2 | AAA domain |
XP_057775744.1 |
Pfam | PF00004 |
AAA | Domain | 48 | 165 | 1.1e-13 | 52.5 | ATPase family associated with various cellular activities (AAA) |
XP_057775744.1 |
Pfam | PF01443 |
Viral_helicase1 | Domain | 49 | 129 | 0.00016 | 22.3 | Viral superfamily 1 RNA helicase core domain |
XP_057775744.1 |
Pfam | PF13177 |
DNA_pol3_delta2 | Domain | 89 | 169 | 3.1e-09 | 37.8 | DNA polymerase III, delta subunit |
XP_057775744.1 |
Pfam | PF08542 |
Rep_fac_C | Domain | 234 | 319 | 1.1e-25 | 90.5 | Replication factor C C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。