Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004011`

染色体: Chr07 坐标: 51146299-51149208 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004011`
名称	SmilChr07G004011
描述	bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	51146299 - 51149208 / `-`

ID 对照

NCBI Gene ID	`LOC130994696`
GeneID	`130994696`
locus_tag	`-`
NCBI Name	`LOC130994696`
原始查询	`LOC130994696`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1-like
产物	bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1-like
Arabidopsis	`AT1G12780` (UGE1) UDP-D-glucose/UDP-D-galactose 4-epimerase 1 [Source:NCBI gene (formerly Entrezgene);Acc:837834] identity=82.5; qcov=0.964; evalue=0; confidence=high
Rice	`Os09g0526700` (OsUGE3) - identity=69.3; qcov=0.936; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0003978 (UDP-glucose 4-epimerase activity); GO:0005829 (cytosol); GO:0006012 (galactose metabolic process); GO:0006364 (rRNA processing)
KEGG	smil00052 (Galactose metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF00106 (adh_short); PF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF04321 (RmlD_sub_bind); PF07993 (NAD_binding_4); PF08659 (KR); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:130994696

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057775747.1`
2	Cytoplasm	细胞质	0.80000	`XP_057775747.1`
3	Nucleus	细胞核	0.00000	`XP_057775747.1`
4	Chromosome	染色体	0.00000	`XP_057775747.1`
5	Centromere	着丝粒	0.00000	`XP_057775747.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:51146703`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B12,B55
`Chr7:51146704`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,B55,B62
`Chr7:51146882`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr7:51147062`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775747.1

362 aa

181

362

RmlD_sub_bind

adh_short

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_4

PF04321 RmlD_sub_bind 10-174 aa PF00106 adh_short 11-126 aa PF08659 KR 11-144 aa PF02719 Polysacc_synt_2 11-195 aa PF01370 Epimerase 11-261 aa PF01073 3Beta_HSD 12-164 aa PF16363 GDP_Man_Dehyd 12-337 aa PF07993 NAD_binding_4 13-177 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775747.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	10	174	2e-10	40.9	RmlD substrate binding domain
`XP_057775747.1`	Pfam	`PF00106`	adh_short	Domain	11	126	2.5e-09	37.6	short chain dehydrogenase
`XP_057775747.1`	Pfam	`PF08659`	KR	Family	11	144	8e-06	26.6	KR domain
`XP_057775747.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	11	195	3.5e-18	66.5	Polysaccharide biosynthesis protein
`XP_057775747.1`	Pfam	`PF01370`	Epimerase	Family	11	261	3.8e-55	187.6	NAD dependent epimerase/dehydratase family
`XP_057775747.1`	Pfam	`PF01073`	3Beta_HSD	Family	12	164	1.6e-14	54.3	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057775747.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	12	337	1.7e-64	219.2	GDP-mannose 4,6 dehydratase
`XP_057775747.1`	Pfam	`PF07993`	NAD_binding_4	Family	13	177	2.5e-05	24.3	Male sterility protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919764.1
AAATTGCCAGGTAAAGAACATTCCTGAGAAACACCGCAACATCCAATTCGGATTTATCCGTTTTGTTGAATTTATTCCAAAAGGAATTCCTCTTTTTACTCAAACTCTCTCTCTCTCTTCTCTCTCTCACTGACTGACTCATCATCCACACGACACGCTTTTCTATTTAAATCCTAAATCCCTGCAACATCACGATACACACGCACTCAAAAGGCGCCAGGTTTGTTGATCATTTCAATGGGATCATCAATGGCTACGAA...

CDS

1 records

下载 CDS FASTA

LOC130994696
ATGGGATCATCAATGGCTACGAAAGAGAGAATTTTGGTTACGGGCGGCGCCGGCTTCATCGGCACGCACACGGTGGTGCAGCTGCTCAAGGAGGGCTTCAAGGTTTCCGTCTTGGACAACCTCGACAATGCCGTCGAAGAAGCAGTTCACAGAGTCAGACAGTTGGTCGGCCCCCAACTCTCCCAGAATCTCGATTTTCATTTGGGCGATATCAGAAATGTGGAGGATTTGGAGAAATTGTTTTCTCAGAGCAAGTTAGA...

Protein

1 records

下载 Protein FASTA

XP_057775747.1
MGSSMATKERILVTGGAGFIGTHTVVQLLKEGFKVSVLDNLDNAVEEAVHRVRQLVGPQLSQNLDFHLGDIRNVEDLEKLFSQSKLDAVIHFAGLKAVGESVANPMRYFDNNLVGSINLYKVMAKYNCKKLVFSSSATVYGQPDKIPCVEDFELKAMNPYGRTKLFLEEIARDLQKADQEWRIILLRYFNPVGAHESGMLGEDPKGIPNNLMPYITQVAVGRLPELNVYGYDYPTHDGSAIRDYIHVMDLADGHVVALEK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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