Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004021`

染色体: Chr07 坐标: 51296042-51300006 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004021`
名称	SmilChr07G004021
描述	uncharacterized SmilChr07G004021
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	51296042 - 51300006 / `+`

ID 对照

NCBI Gene ID	`LOC130994706`
GeneID	`130994706`
locus_tag	`-`
NCBI Name	`LOC130994706`
原始查询	`LOC130994706`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os01g0507500; species=rice; confidence=high
产物	hit=Os01g0507500; species=rice; confidence=high
Arabidopsis	`AT1G71080` (AT1G71080) RNA polymerase II transcription elongation factor [Source:NCBI gene (formerly Entrezgene);Acc:843448] identity=50.3; qcov=0.909; evalue=4.74e-76; confidence=high
Rice	`Os01g0507500` - identity=56.2; qcov=0.858; evalue=7.08e-88; confidence=high
GO	GO:0003711 (transcription elongation factor activity); GO:0032783 (super elongation complex); GO:0034243 (regulation of transcription elongation by RNA polymerase II); GO:0045893 (positive regulation of DNA-templated transcription)
KEGG	-
Pfam	PF09816 (EAF)
InterPro	-
eggNOG	-
NR	GeneID:130994706

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057775760.1`
2	Nucleoplasm	核质	0.40000	`XP_057775760.1`
3	Chromosome	染色体	0.00000	`XP_057775760.1`
4	Centromere	着丝粒	0.00000	`XP_057775760.1`
5	Chromatin	染色质	0.00000	`XP_057775760.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:51297719`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr7:51297971`	`GCC`	`G`	2bp_deletion	frameshift_variant	11	B12,B129,B22,B30,B55,B56,B96,C10,C17,C42,C72
`Chr7:51298009`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr7:51299387`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr7:51299504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C25
`Chr7:51299560`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr7:51299624`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr7:51299641`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775760.1

330 aa

165

330

EAF

PF09816 EAF 20-117 aa

XP_057775761.1

330 aa

165

330

EAF

PF09816 EAF 20-117 aa

XP_057775762.1

330 aa

165

330

EAF

PF09816 EAF 20-117 aa

XP_057775763.1

330 aa

165

330

EAF

PF09816 EAF 20-117 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775760.1`	Pfam	`PF09816`	EAF	Domain	20	117	2.5e-23	83.2	RNA polymerase II transcription elongation factor
`XP_057775761.1`	Pfam	`PF09816`	EAF	Domain	20	117	2.5e-23	83.2	RNA polymerase II transcription elongation factor
`XP_057775762.1`	Pfam	`PF09816`	EAF	Domain	20	117	2.5e-23	83.2	RNA polymerase II transcription elongation factor
`XP_057775763.1`	Pfam	`PF09816`	EAF	Domain	20	117	2.5e-23	83.2	RNA polymerase II transcription elongation factor

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057919777.1
TGTAGCAAAACGTCGAGGCCTAAAGACGCAATCAATACCATTTTATTTGGAACACAAATAATTATTTTTATTTTTAATTTTTAATATTTTGGGGGAGCCGAGTCAGAAATGAGCGAAGGAGAAGAGCAACGAGACTAGCCGCCCTTTCCACCGGAGCAGTTGCAACTGCCGAGCCGCCCCCGCATGTTGACCCTCGTAATTTCGGTGCAAAATAGAATAGAATGGCAGGGATGAACAACTCGAGTGAACCGAGCACTGCA...

XM_057919778.1
CAATACCATTTTATTTGGAACACAAATAATTATTTTTATTTTTAATTTTTAATATTTTGGGGGAGCCGAGTCAGAAATGAGCGAAGGAGAAGAGCAACGAGACTAGCCGCCCTTTCCACCGGAGCAGTTGCAACTGCCGAGCCGCCCCCGCATGTTGACCCTCGTTACTTAATGCTGATGGTAGCATCAGAAGATGTTTGTTAATTTCGGTGCAAAATAGAATAGAATGGCAGGGATGAACAACTCGAGTGAACCGAGCA...

CDS

4 records

下载 CDS FASTA

LOC130994706
ATGGCAGGGATGAACAACTCGAGTGAACCGAGCACTGCACCCCAAGCTGAACGGTGGTACAACCTAACCCTAGGCTCATCCTTCAGTGATCACAATCCCTCAAAATTTTGCACTTTCCGCTATGAGTTCAAGCCAGCATCAATCGATAAGAATCAGCGAGGCACCCTGCACAAAAGCAAGGATAATAAGGTCTCTGTGGAGTTTCAAAATATACAACCTGGGAAGCCTAAGGTAACCTTTGAGGGAACTAGTGAGGATTG...

Protein

4 records

下载 Protein FASTA

XP_057775760.1
MAGMNNSSEPSTAPQAERWYNLTLGSSFSDHNPSKFCTFRYEFKPASIDKNQRGTLHKSKDNKVSVEFQNIQPGKPKVTFEGTSEDCKDNDAVLFFDGESFRLERLHRAVKRLRHNRMMGESAGPGPGPGVVSVGVADASPPPIVKGIKHQPLNKDPFPALPVEVERIEIGDFKSSDAKPRPDKAAEIPVAQPNSSNPSPELKIDDQDEEDLDIMNADEDDGNAAADGSTIEVKELDFDINIPHQTDTDEEIADVDVSDD...

XP_057775761.1
MAGMNNSSEPSTAPQAERWYNLTLGSSFSDHNPSKFCTFRYEFKPASIDKNQRGTLHKSKDNKVSVEFQNIQPGKPKVTFEGTSEDCKDNDAVLFFDGESFRLERLHRAVKRLRHNRMMGESAGPGPGPGVVSVGVADASPPPIVKGIKHQPLNKDPFPALPVEVERIEIGDFKSSDAKPRPDKAAEIPVAQPNSSNPSPELKIDDQDEEDLDIMNADEDDGNAAADGSTIEVKELDFDINIPHQTDTDEEIADVDVSDD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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