Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004025`

染色体: Chr07 坐标: 51352851-51356850 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004025`
名称	SmilChr07G004025
描述	probable phospholipid hydroperoxide glutathione peroxidase
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	51352851 - 51356850 / `-`

ID 对照

NCBI Gene ID	`LOC130994710`
GeneID	`130994710`
locus_tag	`-`
NCBI Name	`LOC130994710`
原始查询	`LOC130994710`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable phospholipid hydroperoxide glutathione peroxidase
产物	probable phospholipid hydroperoxide glutathione peroxidase
Arabidopsis	`AT4G11600` (GPX6) glutathione peroxidase 6 [Source:NCBI gene (formerly Entrezgene);Acc:826765] identity=82.9; qcov=0.716; evalue=1.18e-101; confidence=high
Rice	`Os04g0556300` (OsGpx1) - identity=87.3; qcov=0.69; evalue=5.81e-103; confidence=high
GO	GO:0004602 (glutathione peroxidase activity); GO:0005829 (cytosol); GO:0006979 (response to oxidative stress)
KEGG	smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00255 (GSHPx); PF00578 (AhpC-TSA); PF08534 (Redoxin)
InterPro	-
eggNOG	-
NR	GeneID:130994710

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057775766.1`
2	Mitochondrion matrix	线粒体基质	1.00000	`XP_057775766.1`
3	Nucleus	细胞核	0.00000	`XP_057775766.1`
4	Chromosome	染色体	0.00000	`XP_057775766.1`
5	Centromere	着丝粒	0.00000	`XP_057775766.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:51353194`	`A`	`ATC`	2bp_insertion	frameshift_variant	1	B60
`Chr7:51353194`	`A`	`ATC`	2bp_insertion	CDS_variant	1	B60
`Chr7:51353199`	`TGG`	`T`	2bp_deletion	frameshift_variant	1	B60
`Chr7:51353199`	`TGG`	`T`	2bp_deletion	CDS_variant	1	B60
`Chr7:51353278`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr7:51353299`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B136,B72,C77,D11
`Chr7:51353322`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B86,C5
`Chr7:51353946`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B10
`Chr7:51353946`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr7:51354267`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B120,C36
`Chr7:51356442`	`G`	`A`	EMS_canonical_SNV	stop_gained	15	A4,A6,B113,B54,B69,B7,B90,B92,C21,C29,C35,C54,C56,C57,D9
`Chr7:51356446`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B136,B72,B99,C77,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775766.1

229 aa

114

229

Redoxin

AhpC-TSA

GSHPx

PF08534 Redoxin 71-131 aa PF00578 AhpC-TSA 71-134 aa PF00255 GSHPx 72-180 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775766.1`	Pfam	`PF08534`	Redoxin	Domain	71	131	4.4e-09	37.0	Redoxin
`XP_057775766.1`	Pfam	`PF00578`	AhpC-TSA	Domain	71	134	1.2e-09	38.9	AhpC/TSA family
`XP_057775766.1`	Pfam	`PF00255`	GSHPx	Family	72	180	4.4e-43	146.0	Glutathione peroxidase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919783.1
AAAAAGAAAATAGAGGATCGCCCAAAGACGGCGATCTAAATGCTAGTTTTCTTCTAGAATGATCCTCGCCGTCTAATTCATCCTCGCGAAATCGGACACGGCTCTGAAGCGTGGCACGTGGCGCAGTCGCCACGTGGAAACCGGCATCTTCGTGCACGCCATGCGCCACCGATTTCTGCGGCAGCAAAGATAGCGTTGCAGCTACGACGTCGCTGTCAGATTTCAATTACGCAAATCTAGTTGGCCCCATTAATATTAGT...

CDS

1 records

下载 CDS FASTA

LOC130994710
ATGTCCCGTTGCGCAAGGCATCTCTTCAAATTCAAACCCGCAAACTTTTCTTCCATTTCCAATCGAACCCGTTTCAGCTCATCTCTATTCGGAAAGTATCATTTGCGTTTTCAGCAGGAACAAGCGGTTTCCAATTCTTCGACTGGTATTACTCAAAGAAAGAATCTGCTTTTCAGTCGTGCGATGGCAACTCAGTCAACCCCGCCTCAATCCATCCATGATTTCACTGTGAAGGATGCGAAAGGCAATAATGTTGATTT...

Protein

1 records

下载 Protein FASTA

XP_057775766.1
MSRCARHLFKFKPANFSSISNRTRFSSSLFGKYHLRFQQEQAVSNSSTGITQRKNLLFSRAMATQSTPPQSIHDFTVKDAKGNNVDLSAYKGKVLLIVNVASQCGLTNSNYTELTKLYEKYKDQGLEILAFPCNQFGSQEPGTNEEIQEFACTRFKAEYPIFDKVEVNGPNAAPIYKYMKSVKGGLFGDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDVKKLLGL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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