Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004039`

染色体: Chr07 坐标: 51644271-51649660 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004039`
名称	SmilChr07G004039
描述	probable LRR receptor-like serine/threonine-protein kinase At1g63430
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	51644271 - 51649660 / `-`

ID 对照

NCBI Gene ID	`LOC130994722`
GeneID	`130994722`
locus_tag	`-`
NCBI Name	`LOC130994722`
原始查询	`LOC130994722`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable LRR receptor-like serine/threonine-protein kinase At1g63430
产物	probable LRR receptor-like serine/threonine-protein kinase At1g63430
Arabidopsis	`AT1G63430` (AT1G63430) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842649] identity=63; qcov=1.01; evalue=0; confidence=high
Rice	`Os04g0683600` - identity=49.5; qcov=0.586; evalue=8.3e-121; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:130994722

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057775770.1`
2	Nucleus	细胞核	0.00000	`XP_057775770.1`
3	Chromosome	染色体	0.00000	`XP_057775770.1`
4	Centromere	着丝粒	0.00000	`XP_057775770.1`
5	Chromatin	染色质	0.00000	`XP_057775770.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:51645031`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C25
`Chr7:51645956`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr7:51645983`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,A8,B3,B81
`Chr7:51646351`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B44,B99,C77
`Chr7:51646420`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr7:51647244`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B44,B72,B99,C77
`Chr7:51648117`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C25
`Chr7:51648147`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A24,B104,B26
`Chr7:51648539`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B134,B33

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775770.1

660 aa

330

660

LRRNT_2

LRR_8

LRR_1

PK_Tyr_Ser-Thr

Pkinase

PF08263 LRRNT_2 26-66 aa PF13855 LRR_8 95-154 aa PF00560 LRR_1 119-141 aa PF00560 LRR_1 144-165 aa PF07714 PK_Tyr_Ser-Thr 366-631 aa PF00069 Pkinase 367-631 aa

XP_057775772.1

659 aa

330

659

LRRNT_2

LRR_8

LRR_1

PK_Tyr_Ser-Thr

Pkinase

PF08263 LRRNT_2 26-66 aa PF13855 LRR_8 95-154 aa PF00560 LRR_1 119-141 aa PF00560 LRR_1 144-165 aa PF07714 PK_Tyr_Ser-Thr 365-630 aa PF00069 Pkinase 366-630 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775770.1`	Pfam	`PF08263`	LRRNT_2	Family	26	66	1.7e-09	38.5	Leucine rich repeat N-terminal domain
`XP_057775770.1`	Pfam	`PF13855`	LRR_8	Repeat	95	154	1.7e-09	38.0	Leucine rich repeat
`XP_057775770.1`	Pfam	`PF00560`	LRR_1	Repeat	119	141	2.5e-15	54.0	Leucine Rich Repeat
`XP_057775770.1`	Pfam	`PF00560`	LRR_1	Repeat	144	165	2.5e-15	54.0	Leucine Rich Repeat
`XP_057775770.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	366	631	1.9e-17	64.2	Protein tyrosine and serine/threonine kinase
`XP_057775770.1`	Pfam	`PF00069`	Pkinase	Domain	367	631	5.2e-15	56.3	Protein kinase domain
`XP_057775772.1`	Pfam	`PF08263`	LRRNT_2	Family	26	66	1.7e-09	38.5	Leucine rich repeat N-terminal domain
`XP_057775772.1`	Pfam	`PF13855`	LRR_8	Repeat	95	154	1.6e-09	38.1	Leucine rich repeat
`XP_057775772.1`	Pfam	`PF00560`	LRR_1	Repeat	119	141	2.5e-15	54.0	Leucine Rich Repeat
`XP_057775772.1`	Pfam	`PF00560`	LRR_1	Repeat	144	165	2.5e-15	54.0	Leucine Rich Repeat
`XP_057775772.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	365	630	1.9e-17	64.2	Protein tyrosine and serine/threonine kinase
`XP_057775772.1`	Pfam	`PF00069`	Pkinase	Domain	366	630	5.2e-15	56.3	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057919787.1
TGTTTGGTATGATGCTAGTGCCCTTATTCTAAGATATTTAGATTTAGCTTCACGTAATAATCACAATAATCATCTCTAATAAAAAGTAATTACGCCACTAATCCCACTACTCCCCCTTTCCTGCTCCTGCTTCCTCAACTTCTTCCATCCTCATTAATCAACAAAAAAATTAAATAAAATAAACACACACACACACAGACACAACCGCCAGATTTTGCAGGCAATTTTGCTCAAGAAAATTAAGCACGACATTCTAGAGC...

XM_057919789.1
TTTGGTATGATGCTAGTGCCCTTATTCTAAGATATTTAGATTTAGCTTCACGTAATAATCACAATAATCATCTCTAATAAAAAGTAATTACGCCACTAATCCCACTACTCCCCCTTTCCTGCTCCTGCTTCCTCAACTTCTTCCATCCTCATTAATCAACAAAAAAATTAAATAAAATAAACACACACACACACAGACACAACCGCCAGATTTTGCAGGCAATTTTGCTCAAGAAAATTAAGCACGACATTCTAGAGCTT...

CDS

2 records

下载 CDS FASTA

LOC130994722
ATGAGATGGTTTACTTCATTTGGAGCTCTTTTATTAAGTTTAGGACTCTTTCTGGCAGACTGCGCCACATTCCCCCAAAATGAAGTTGAAGCTTTAAATTCCTTCAAGAGGGAGATTTTGGAGGATCCCTCGCATGTGTTGTCGAATTGGAATTTTCTCGACTCCGATCCTTGTGGTTGGCCTTTCATTGCTTGCTCTGTGGCTGGAGATCATGTCACAAAGCTTAATGTGTCTGGAAAGTCTTTGAAGGGGTTTATTGC...

Protein

2 records

下载 Protein FASTA

XP_057775770.1
MRWFTSFGALLLSLGLFLADCATFPQNEVEALNSFKREILEDPSHVLSNWNFLDSDPCGWPFIACSVAGDHVTKLNVSGKSLKGFIAPDLYQLSGLQELILHGNLLIGTIPKEIGMLKNLKVLDLGSNQLTGAIPPEIGNLSSIVTINLQSNGLTGKLPPELGNLDYLEELRLDRNKLIGTLPANGSDTTSDTRGIYASNSEPTGFCRTSRLKVADFSFNFLVGVIPKCLGYLPRTSFQGNCLQDKDAKQRSAALCAGGA...

XP_057775772.1
MRWFTSFGALLLSLGLFLADCATFPQNEVEALNSFKREILEDPSHVLSNWNFLDSDPCGWPFIACSVAGDHVTKLNVSGKSLKGFIAPDLYQLSGLQELILHGNLLIGTIPKEIGMLKNLKVLDLGSNQLTGAIPPEIGNLSSIVTINLQSNGLTGKLPPELGNLDYLEELRLDRNKLIGTLPANGSDTTSDTRGIYASNSEPTGFCRTSRLKVADFSFNFLVGVIPKCLGYLPRTSFQGNCLQDKDAKQRSAALCGGAP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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