当前解析结果
SmilChr07G004090| 统一新 Gene ID | SmilChr07G004090 |
|---|---|
| 名称 | SmilChr07G004090 |
| 描述 | uncharacterized SmilChr07G004090 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 52434993 - 52444450 / + |
| NCBI Gene ID | LOC130994761 |
|---|---|
| GeneID | 130994761 |
| locus_tag | - |
| NCBI Name | LOC130994761 |
| 原始查询 | LOC130994761 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | bZIP transcription factor, putative (DUF1664) [Source:NCBI gene (formerly Entrezgene);Acc:839041]; symbol=AT1G24265; hit=AT1G24265; species=arabidopsis; confidence=medium |
| 产物 | bZIP transcription factor, putative (DUF1664) [Source:NCBI gene (formerly Entrezgene);Acc:839041]; symbol=AT1G24265; hit=AT1G24265; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G24265 (AT1G24265)bZIP transcription factor, putative (DUF1664) [Source:NCBI gene (formerly Entrezgene);Acc:839041] identity=42; qcov=0.856; evalue=5.28e-72; confidence=medium |
| Rice | Os01g0100800- identity=38.2; qcov=0.756; evalue=1.68e-54; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF07889 (DUF1664) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994761 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057775804.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 0.40000 | XP_057775804.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057775804.1 |
| 4 | Peroxisome membrane | 过氧化物酶体膜 | 0.20000 | XP_057775804.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057775804.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:52435299 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr7:52442292 |
AT |
A |
1bp_deletion | frameshift_variant | 9 | A13,B113,B134,B36,B78,B91,C58,C59,C73 |
Chr7:52442326 |
TA |
T |
1bp_deletion | frameshift_variant | 77 | A1,A22,A24,A25,A7,B1,B100,B105,B110,B112,B117,B118,B122,B123,B124,B125,B126,B13,B131,B135,B136,B14,B140,B18,B20,B23,B26,B27,B3,B35,B40,B44,B47,B49,B50,B54,B60,B64,B71,B81,B82,B83,B86,B88,B89,B95,B96,B98,B99,C1,C10,C11,C13,C18,C19,C2,C20,C21,C25,C27,C28,C3,C33,C39,C41,C43,C47,C48,C50,C62,C79,C80,C82,C84,C9,D10,D8 |
Chr7:52442355 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B46 |
Chr7:52442355 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr7:52442357 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B119 |
Chr7:52442383 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B119 |
Chr7:52443019 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr7:52443059 |
T |
TGC |
2bp_insertion | frameshift_variant | 20 | A19,A6,B100,B31,B32,B4,B54,B74,B90,B91,B92,B97,C12,C14,C35,C47,C72,D1,D10,D9 |
Chr7:52443061 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:52443182 |
GT |
G |
1bp_deletion | frameshift_variant | 4 | A18,B140,B73,C30 |
Chr7:52443182 |
GT |
G |
1bp_deletion | CDS_variant | 4 | A18,B140,B73,C30 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057775804.1PF07889
DUF1664 94-212 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775804.1 |
Pfam | PF07889 |
DUF1664 | Coiled-coil | 94 | 212 | 3.6e-38 | 131.1 | Protein of unknown function (DUF1664) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。