当前解析结果
SmilChr07G004109| 统一新 Gene ID | SmilChr07G004109 |
|---|---|
| 名称 | SmilChr07G004109 |
| 描述 | uncharacterized SmilChr07G004109 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 52724759 - 52728660 / - |
| NCBI Gene ID | LOC130994774 |
|---|---|
| GeneID | 130994774 |
| locus_tag | - |
| NCBI Name | LOC130994774 |
| 原始查询 | LOC130994774 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0704400; species=rice; confidence=low |
| 产物 | hit=Os06g0704400; species=rice; confidence=low |
| Arabidopsis | AT3G05850 (MUG7)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859] identity=25.2; qcov=0.501; evalue=4.57e-50; confidence=low |
| Rice | Os06g0704400- identity=33.2; qcov=0.618; evalue=1.34e-108; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF04434 (SWIM); PF10551 (MULE); PF26130 (PB1-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994774 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057775820.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057775820.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057775820.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057775820.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057775820.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:52724952 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A5,B60,C47,C68,C71 |
Chr7:52725017 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A7 |
Chr7:52725132 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B3,C77 |
Chr7:52725204 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B104,B41,D2 |
Chr7:52725221 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B101,B56,B96 |
Chr7:52725238 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr7:52725259 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B27,B63 |
Chr7:52725263 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B10,B13,B4,C76,D4 |
Chr7:52725310 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A16,B29,B54,D10 |
Chr7:52725313 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B15,C77 |
Chr7:52725429 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:52725433 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B27,B63 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775820.1PF26130
PB1-like 2-93 aa
PF10551
MULE 528-623 aa
PF00872
Transposase_mut 545-664 aa
PF04434
SWIM 766-804 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775820.1 |
Pfam | PF26130 |
PB1-like | Domain | 2 | 93 | 3.2e-17 | 63.4 | PB1-like domain |
XP_057775820.1 |
Pfam | PF10551 |
MULE | Domain | 528 | 623 | 2.6e-14 | 54.1 | MULE transposase domain |
XP_057775820.1 |
Pfam | PF00872 |
Transposase_mut | Family | 545 | 664 | 3.5e-05 | 23.6 | Transposase, Mutator family |
XP_057775820.1 |
Pfam | PF04434 |
SWIM | Domain | 766 | 804 | 8e-09 | 35.6 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。