Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004113`

染色体: Chr07 坐标: 52793482-52797247 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004113`
名称	SmilChr07G004113
描述	uncharacterized SmilChr07G004113
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	52793482 - 52797247 / `-`

ID 对照

NCBI Gene ID	`LOC130994777`
GeneID	`130994777`
locus_tag	`-`
NCBI Name	`LOC130994777`
原始查询	`LOC130994777`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bromo-adjacent domain protein, putative (DUF3527) [Source:NCBI gene (formerly Entrezgene);Acc:826749]; symbol=AT4G11450; hit=AT4G11450; species=arabidopsis; confidence=medium
产物	bromo-adjacent domain protein, putative (DUF3527) [Source:NCBI gene (formerly Entrezgene);Acc:826749]; symbol=AT4G11450; hit=AT4G11450; species=arabidopsis; confidence=medium
Arabidopsis	`AT4G11450` (AT4G11450) bromo-adjacent domain protein, putative (DUF3527) [Source:NCBI gene (formerly Entrezgene);Acc:826749] identity=36.1; qcov=1.16; evalue=1.7e-101; confidence=medium
Rice	`Os03g0105800` - identity=35.5; qcov=0.722; evalue=4.9e-65; confidence=medium
GO	-
KEGG	-
Pfam	PF12043 (DUF3527)
InterPro	-
eggNOG	-
NR	GeneID:130994777

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057775824.1`
2	Nucleus	细胞核	0.20000	`XP_057775824.1`
3	Cytoplasm	细胞质	0.20000	`XP_057775824.1`
4	Chromosome	染色体	0.00000	`XP_057775824.1`
5	Centromere	着丝粒	0.00000	`XP_057775824.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:52794032`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr7:52794148`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr7:52794237`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B16,B40
`Chr7:52794239`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:52794859`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr7:52794972`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A3,B138,C13,C14
`Chr7:52795066`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A10,B87,C64
`Chr7:52795068`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr7:52795131`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B8
`Chr7:52795231`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B14,C59
`Chr7:52795274`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr7:52795359`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B15,B95

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775824.1

616 aa

308

616

DUF3527

PF12043 DUF3527 267-377 aa PF12043 DUF3527 382-551 aa

XP_057775825.1

616 aa

308

616

DUF3527

PF12043 DUF3527 267-377 aa PF12043 DUF3527 382-551 aa

XP_057775826.1

616 aa

308

616

DUF3527

PF12043 DUF3527 267-377 aa PF12043 DUF3527 382-551 aa

XP_057775827.1

616 aa

308

616

DUF3527

PF12043 DUF3527 267-377 aa PF12043 DUF3527 382-551 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775824.1`	Pfam	`PF12043`	DUF3527	Family	267	377	7.8e-88	296.0	Domain of unknown function (DUF3527)
`XP_057775824.1`	Pfam	`PF12043`	DUF3527	Family	382	551	7.8e-88	296.0	Domain of unknown function (DUF3527)
`XP_057775825.1`	Pfam	`PF12043`	DUF3527	Family	267	377	7.8e-88	296.0	Domain of unknown function (DUF3527)
`XP_057775825.1`	Pfam	`PF12043`	DUF3527	Family	382	551	7.8e-88	296.0	Domain of unknown function (DUF3527)
`XP_057775826.1`	Pfam	`PF12043`	DUF3527	Family	267	377	7.8e-88	296.0	Domain of unknown function (DUF3527)
`XP_057775826.1`	Pfam	`PF12043`	DUF3527	Family	382	551	7.8e-88	296.0	Domain of unknown function (DUF3527)
`XP_057775827.1`	Pfam	`PF12043`	DUF3527	Family	267	377	7.8e-88	296.0	Domain of unknown function (DUF3527)
`XP_057775827.1`	Pfam	`PF12043`	DUF3527	Family	382	551	7.8e-88	296.0	Domain of unknown function (DUF3527)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057919844.1
ATTGTGCAAATTAACTTTATTCATATGGTGGGCTGCTCCTCAATGATTTTCTCTTTTCCCTTTTCACTCATCCCCACACTCATTTCTTTGTCTCTTTGAGAAGGAAAACAAGAAAATTTCCAAGAACTGGTTTTTTTTTTCCCTGATTCTTTTTGGGTTCTGGAATTTTGCATTTTCTTGTTTGGAACGTGATATTGGGTTTTACCAAACAAGGCTTCGAGCTCAAGAGAAGGAGAAAATGATTGCTTTTCCTTGCTGCA...

XM_057919841.1
ATTGTGCAAATTAACTTTATTCATATGGTGGGCTGCTCCTCAATGATTTTCTCTTTTCCCTTTTCACTCATCCCCACACTCATTTCTTTGTCTCTTTGAGAAGGAAAACAAGAAAATTTCCAAGAACTGGTTTTTTTTTTCCCTGATTCTTTTTGGGTTCTGGAATTTTGCATTTTCTTGTTTGGAACGTGATATTGGGTTTTACCAAACAAGGCTTCGAGCTCAAGAGAAGGAGAAAATGATTGCTTTTCCTTGCTGCA...

CDS

4 records

下载 CDS FASTA

LOC130994777
ATGGACTTAGACTTCGACAAGTATTGTCTTGTAGATGGAAGTCCCACAACCGTGCTACCCGTTCCTAGGCCTCGTTCGTGTGTTGCAGGTAGAAAACCAAGCGGAAAGTGCGAATTTAGGAATGAGACACCAAGCCCCACTGAGTTTGAGATTGATTTTGGTGACTACTGTAGCGGATCGTGTAGAGATGTCCGGTCCCAGAGAATCAGTGGTGAAGTGCTGAAGAGAGGATCGGTCTATCAAAGCTCCAAAGAGGCAAA...

Protein

4 records

下载 Protein FASTA

XP_057775824.1
MDLDFDKYCLVDGSPTTVLPVPRPRSCVAGRKPSGKCEFRNETPSPTEFEIDFGDYCSGSCRDVRSQRISGEVLKRGSVYQSSKEAKLIQETDAAVGRKKIEFSPRTASSLSIEIIESLCNSDEESSVMSFSEQSTASGYANGVEFCYDDSTEEASSPRGKDVALSLHRPLSARFGLPHSPANSGRDSSRASSSSRGRFSHVRNMLDPFVKSKSRRSPLCSFNETHGETTSGRPMLGDIFEKPHHVEYDHQYEEKKETHN...

XP_057775825.1
MDLDFDKYCLVDGSPTTVLPVPRPRSCVAGRKPSGKCEFRNETPSPTEFEIDFGDYCSGSCRDVRSQRISGEVLKRGSVYQSSKEAKLIQETDAAVGRKKIEFSPRTASSLSIEIIESLCNSDEESSVMSFSEQSTASGYANGVEFCYDDSTEEASSPRGKDVALSLHRPLSARFGLPHSPANSGRDSSRASSSSRGRFSHVRNMLDPFVKSKSRRSPLCSFNETHGETTSGRPMLGDIFEKPHHVEYDHQYEEKKETHN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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