当前解析结果
SmilChr07G004119| 统一新 Gene ID | SmilChr07G004119 |
|---|---|
| 名称 | SmilChr07G004119 |
| 描述 | GDP-mannose transporter GONST1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 52866359 - 52869364 / - |
| NCBI Gene ID | LOC130994780 |
|---|---|
| GeneID | 130994780 |
| locus_tag | - |
| NCBI Name | LOC130994780 |
| 原始查询 | LOC130994780 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GDP-mannose transporter GONST1-like |
| 产物 | GDP-mannose transporter GONST1-like |
| Arabidopsis | AT2G13650 (GONST1)golgi nucleotide sugar transporter 1 [Source:NCBI gene (formerly Entrezgene);Acc:815850] identity=81; qcov=0.834; evalue=4.63e-56; confidence=high |
| Rice | Os03g0826300- identity=63; qcov=0.821; evalue=2.92e-41; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994780 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057775830.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057775830.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057775830.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057775830.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775830.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:52866983 |
C |
CT |
1bp_insertion | frameshift_variant | 8 | B1,B24,B36,B45,C22,C25,C30,C79 |
Chr7:52866998 |
A |
AC |
1bp_insertion | frameshift_variant | 13 | A2,B115,B16,B18,B50,B51,B66,B72,B95,C12,C3,C42,C76 |
Chr7:52867033 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C19,C61,C80 |
Chr7:52867037 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr7:52867198 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B124,B53,B71,C45 |
Chr7:52867210 |
A |
AT |
1bp_insertion | frameshift_variant | 10 | A9,B112,B31,B50,B56,B86,B91,C23,C58,D11 |
Chr7:52867216 |
TGC |
T |
2bp_deletion | frameshift_variant | 2 | B31,B91 |
Chr7:52867216 |
TGC |
T |
2bp_deletion | CDS_variant | 2 | B31,B91 |
Chr7:52867221 |
TGA |
T |
2bp_deletion | frameshift_variant | 2 | B31,B91 |
Chr7:52867221 |
TGA |
T |
2bp_deletion | CDS_variant | 2 | B31,B91 |
Chr7:52867228 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B115,B12,B127,B68,C82 |
Chr7:52868284 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C18 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。