Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004260`

染色体: Chr07 坐标: 55034424-55039508 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004260`
名称	SmilChr07G004260
描述	uncharacterized SmilChr07G004260
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	55034424 - 55039508 / `+`

ID 对照

NCBI Gene ID	`LOC130994821`
GeneID	`130994821`
locus_tag	`-`
NCBI Name	`LOC130994821`
原始查询	`LOC130994821`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcriptional factor B3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:829292]; symbol=AT4G31640; hit=AT4G31640; species=arabidopsis; confidence=low
产物	transcriptional factor B3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:829292]; symbol=AT4G31640; hit=AT4G31640; species=arabidopsis; confidence=low
Arabidopsis	`AT4G31640` (AT4G31640) transcriptional factor B3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:829292] identity=26.8; qcov=0.358; evalue=8.86e-11; confidence=low
Rice	`-` -
GO	GO:0003677 (DNA binding); GO:0006508 (proteolysis); GO:0008234 (cysteine-type peptidase activity)
KEGG	-
Pfam	PF02362 (B3); PF02902 (Peptidase_C48)
InterPro	-
eggNOG	-
NR	GeneID:130994821

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057775877.1`
2	Chromosome	染色体	0.20000	`XP_057775877.1`
3	Centromere	着丝粒	0.00000	`XP_057775877.1`
4	Chromatin	染色质	0.00000	`XP_057775877.1`
5	Telomere	端粒	0.00000	`XP_057775877.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:55035434`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr7:55035458`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr7:55035776`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr7:55035828`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A20,B119,B21,B37
`Chr7:55035886`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:55035922`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:55035937`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,B119,B21,B37
`Chr7:55035942`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B124,B71,C16
`Chr7:55035972`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B36,D11
`Chr7:55035990`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr7:55035993`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A20,D11
`Chr7:55036008`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B7,C15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775877.1

726 aa

363

726

Peptidase_C48

PF02362 B3 52-131 aa PF02362 B3 168-252 aa PF02902 Peptidase_C48 543-694 aa

XP_057775878.1

668 aa

334

668

Peptidase_C48

PF02362 B3 52-131 aa PF02362 B3 168-252 aa PF02902 Peptidase_C48 541-636 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775877.1`	Pfam	`PF02362`	B3	Domain	52	131	2.1e-23	82.8	B3 DNA binding domain
`XP_057775877.1`	Pfam	`PF02362`	B3	Domain	168	252	2.1e-23	82.8	B3 DNA binding domain
`XP_057775877.1`	Pfam	`PF02902`	Peptidase_C48	Domain	543	694	2.9e-08	34.5	Ulp1 protease family, C-terminal catalytic domain
`XP_057775878.1`	Pfam	`PF02362`	B3	Domain	52	131	1.5e-23	83.3	B3 DNA binding domain
`XP_057775878.1`	Pfam	`PF02362`	B3	Domain	168	252	1.5e-23	83.3	B3 DNA binding domain
`XP_057775878.1`	Pfam	`PF02902`	Peptidase_C48	Domain	541	636	1e-05	26.2	Ulp1 protease family, C-terminal catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057919894.1
TGAAAATCCAAAATCTCGCGTCGATAATAAAGTATTTGCAGGAGCGACTGCAAAAGTAAGAGAGAGAAAGGCGGGAAAATACTAGAAACGGAAACATGAGCAGTCTGAGAATCGAGAAAGATGGGAAGCTCAGGCCACTGATGAGGAAACAAGTAAAGATGCAATCAATATCAACAAAATTAGGGGAATCACAACAAAGGAGGAGAAGAAGAAGGAAAAAGAGAAGAGGTTTAGCTCACGCGAAATCAGAGGCTCCTAGA...

XM_057919895.1
TGAAAATCCAAAATCTCGCGTCGATAATAAAGTATTTGCAGGAGCGACTGCAAAAGTAAGAGAGAGAAAGGCGGGAAAATACTAGAAACGGAAACATGAGCAGTCTGAGAATCGAGAAAGATGGGAAGCTCAGGCCACTGATGAGGAAACAAGTAAAGATGCAATCAATATCAACAAAATTAGGGGAATCACAACAAAGGAGGAGAAGAAGAAGGAAAAAGAGAAGAGGTTTAGCTCACGCGAAATCAGAGGCTCCTAGA...

CDS

2 records

下载 CDS FASTA

LOC130994821
ATGGACACCACTCCTCATCCTCATCCTCATCGTCGCCGAGTTCCGAGCATGCGAAGAATCAAGAAAGTTGAAGATGACGCTGAAATCTCCGAATCGGGACTGGCTGTTCCCCCAGAAATTCCTCATTTTGTGTGGATAGCAAAACCTGGAGAAATAAATGAGTTGTATCTCCCCAAAAAAGTCATAGAATACTACCATCTTAAGATCCCAAAAATCATATCCTTCGTCGATGAACAGGGGAGAGAATGGGATGTGAATGT...

Protein

2 records

下载 Protein FASTA

XP_057775877.1
MDTTPHPHPHRRRVPSMRRIKKVEDDAEISESGLAVPPEIPHFVWIAKPGEINELYLPKKVIEYYHLKIPKIISFVDEQGREWDVNVFKNRKSHRCSKVAWKRVCEANLINTGDVCIFEFMQGRIDLYIRVRIKRAHELQSKPTHCRDGDIFMPGNPRFVWRVTQVYRRRLVIPRTVIKNYNLKIPNIISLIDERGNKWETKILKWRSGHLACPDHVWRSLCDANLMEMGDRCICEFIEEQSGLSIFVRVARAHKLTRKK...

XP_057775878.1
MDTTPHPHPHRRRVPSMRRIKKVEDDAEISESGLAVPPEIPHFVWIAKPGEINELYLPKKVIEYYHLKIPKIISFVDEQGREWDVNVFKNRKSHRCSKVAWKRVCEANLINTGDVCIFEFMQGRIDLYIRVRIKRAHELQSKPTHCRDGDIFMPGNPRFVWRVTQVYRRRLVIPRTVIKNYNLKIPNIISLIDERGNKWETKILKWRSGHLACPDHVWRSLCDANLMEMGDRCICEFIEEQSGLSIFVRVARAHKLTRKK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器