当前解析结果
SmilChr01G000956| 统一新 Gene ID | SmilChr01G000956 |
|---|---|
| 名称 | SmilChr01G000956 |
| 描述 | uncharacterized SmilChr01G000956 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 20214644 - 20223801 / - |
| NCBI Gene ID | LOC130994822 |
|---|---|
| GeneID | 130994822 |
| locus_tag | - |
| NCBI Name | LOC130994822 |
| 原始查询 | LOC130994822 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:28719301]; symbol=AT3G22125; hit=AT3G22125; species=arabidopsis; confidence=low |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:28719301]; symbol=AT3G22125; hit=AT3G22125; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G22125 (AT3G22125)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:28719301] identity=43.7; qcov=0.426; evalue=3.19e-82; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994822 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.40000 | XP_057775922.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057775922.1 |
| 3 | Cell wall | 细胞壁 | 0.20000 | XP_057775922.1 |
| 4 | Vacuole | 液泡 | 0.20000 | XP_057775922.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057775922.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:20215248 |
CA |
C |
1bp_deletion | frameshift_variant | 6 | A1,A22,B111,B6,C6,C61 |
Chr1:20215418 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B61,B89,C83 |
Chr1:20215443 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,B19,B57,C15,D7 |
Chr1:20215488 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B8,C67 |
Chr1:20215533 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B137,B93,C58 |
Chr1:20215546 |
GGC |
G |
2bp_deletion | frameshift_variant | 38 | A1,A25,B101,B106,B108,B117,B126,B17,B30,B33,B38,B4,B42,B55,B56,B59,B62,B63,B64,B76,B86,B89,B9,B91,B93,C10,C19,C20,C25,C29,C36,C38,C42,C47,C52,C81,C87,D8 |
Chr1:20215590 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr1:20215598 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr1:20215602 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B38 |
Chr1:20215602 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B38 |
Chr1:20215604 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B38 |
Chr1:20215604 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B38 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。