Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004258`

染色体: Chr07 坐标: 55011185-55016474 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004258`
名称	SmilChr07G004258
描述	uncharacterized SmilChr07G004258
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	55011185 - 55016474 / `+`

ID 对照

NCBI Gene ID	`LOC130994823`
GeneID	`130994823`
locus_tag	`-`
NCBI Name	`LOC130994823`
原始查询	`LOC130994823`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcriptional factor B3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:829292]; symbol=AT4G31640; hit=AT4G31640; species=arabidopsis; confidence=weak
产物	transcriptional factor B3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:829292]; symbol=AT4G31640; hit=AT4G31640; species=arabidopsis; confidence=weak
Arabidopsis	`AT4G31640` (AT4G31640) transcriptional factor B3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:829292] identity=24.6; qcov=0.349; evalue=2.44e-09; confidence=weak
Rice	`-` -
GO	GO:0003677 (DNA binding); GO:0006508 (proteolysis); GO:0008234 (cysteine-type peptidase activity)
KEGG	-
Pfam	PF02362 (B3); PF02902 (Peptidase_C48)
InterPro	-
eggNOG	-
NR	GeneID:130994823

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057775879.1`
2	Chromosome	染色体	0.20000	`XP_057775879.1`
3	Centromere	着丝粒	0.00000	`XP_057775879.1`
4	Chromatin	染色质	0.00000	`XP_057775879.1`
5	Telomere	端粒	0.00000	`XP_057775879.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:55011483`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C38
`Chr7:55011483`	`TG`	`T`	1bp_deletion	CDS_variant	1	C38
`Chr7:55012788`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B73,B9,C52
`Chr7:55012917`	`GT`	`G`	1bp_deletion	frameshift_variant	2	C53,D2
`Chr7:55012917`	`GT`	`G`	1bp_deletion	CDS_variant	2	C53,D2
`Chr7:55012951`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,A8,B3,B81
`Chr7:55013486`	`C`	`CTA`	2bp_insertion	frameshift_variant	3	B138,B22,C72
`Chr7:55013486`	`C`	`CTA`	2bp_insertion	CDS_variant	3	B138,B22,C72
`Chr7:55013501`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B45,B75,C14,C34,C77
`Chr7:55013568`	`GAC`	`G`	2bp_deletion	frameshift_variant	3	C54,C78,C83
`Chr7:55013568`	`GAC`	`G`	2bp_deletion	CDS_variant	3	C54,C78,C83
`Chr7:55013609`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B129,B31,B57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775879.1

720 aa

360

720

Peptidase_C48

PF02362 B3 52-130 aa PF02362 B3 166-252 aa PF02902 Peptidase_C48 590-688 aa

XP_057775880.1

664 aa

332

664

Peptidase_C48

PF02362 B3 52-130 aa PF02362 B3 166-252 aa PF02902 Peptidase_C48 537-632 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775879.1`	Pfam	`PF02362`	B3	Domain	52	130	5.2e-23	81.6	B3 DNA binding domain
`XP_057775879.1`	Pfam	`PF02362`	B3	Domain	166	252	5.2e-23	81.6	B3 DNA binding domain
`XP_057775879.1`	Pfam	`PF02902`	Peptidase_C48	Domain	590	688	6.6e-08	33.4	Ulp1 protease family, C-terminal catalytic domain
`XP_057775880.1`	Pfam	`PF02362`	B3	Domain	52	130	3.7e-23	82.1	B3 DNA binding domain
`XP_057775880.1`	Pfam	`PF02362`	B3	Domain	166	252	3.7e-23	82.1	B3 DNA binding domain
`XP_057775880.1`	Pfam	`PF02902`	Peptidase_C48	Domain	537	632	1e-05	26.2	Ulp1 protease family, C-terminal catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057919896.1
AATAATAAAGTTTTTGCAGGAGCGACTGCAAAAGTAAGAGAGAGAAAGGCGGGAAAATACTAGAAACAGAAAGAGGAGCAGTTGTGCATCGAGAAAGATGGGAAGCTCAGGCCACTGATGAGGAAACAAGTAAAGATGCATTCAATATCAACAAAATTAGGGGAATCACAACAAAGGAGGAGAAGAAGAAGGAAAAGAGAAGAGGTTTAGCTCAGGAGAAATCAGAGGCTCCTAGAGAGAGAAAGAGAGAGATTCAGAGG...

XM_057919897.1
AATAATAAAGTTTTTGCAGGAGCGACTGCAAAAGTAAGAGAGAGAAAGGCGGGAAAATACTAGAAACAGAAAGAGGAGCAGTTGTGCATCGAGAAAGATGGGAAGCTCAGGCCACTGATGAGGAAACAAGTAAAGATGCATTCAATATCAACAAAATTAGGGGAATCACAACAAAGGAGGAGAAGAAGAAGGAAAAGAGAAGAGGTTTAGCTCAGGAGAAATCAGAGGCTCCTAGAGAGAGAAAGAGAGAGATTCAGAGG...

CDS

2 records

下载 CDS FASTA

LOC130994823
ATGGACACCACTCCTCATCCTCATCCTCATCGTCGCCGAGTTCCGAGCATGCGAAGGATCAAGAAAGTTGAAGATGACGCTGAAATCTCTGAATCGGGACTGGCTGTTCCCCCAGAAATTCCTCATTTTGTGTGGAGAGCAAAACCTGGAGAAATAAATGAGTTGTATCTCCCCAAAAAAGTCATAGAATACTACCATCTTAAGATCCCAAATATCATATCCTTCGTCGATGAACAGGGGAGAGAATGGGATGTGAATGT...

Protein

2 records

下载 Protein FASTA

XP_057775879.1
MDTTPHPHPHRRRVPSMRRIKKVEDDAEISESGLAVPPEIPHFVWRAKPGEINELYLPKKVIEYYHLKIPNIISFVDEQGREWDVNVIKNRKSHRCSKVAWKRVCEANLINTGDVCIFEFMQGPIDLYIRVRIKRAHELQSKATHCRDGDIFMPGKPHFVWRLTQEKRRRLTLPRTVIKNYNLKIPNIISLIDERGNKWETKILKWRDGHLACPDHVWRSLCDANLMEMGDRCICEFIEEQSGLSIFVRVARAHKLTRKK...

XP_057775880.1
MDTTPHPHPHRRRVPSMRRIKKVEDDAEISESGLAVPPEIPHFVWRAKPGEINELYLPKKVIEYYHLKIPNIISFVDEQGREWDVNVIKNRKSHRCSKVAWKRVCEANLINTGDVCIFEFMQGPIDLYIRVRIKRAHELQSKATHCRDGDIFMPGKPHFVWRLTQEKRRRLTLPRTVIKNYNLKIPNIISLIDERGNKWETKILKWRDGHLACPDHVWRSLCDANLMEMGDRCICEFIEEQSGLSIFVRVARAHKLTRKK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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