Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004282`

染色体: Chr07 坐标: 55363467-55369450 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004282`
名称	SmilChr07G004282
描述	uncharacterized SmilChr07G004282
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	55363467 - 55369450 / `-`

ID 对照

NCBI Gene ID	`LOC130994824`
GeneID	`130994824`
locus_tag	`-`
NCBI Name	`LOC130994824`
原始查询	`LOC130994824`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	XH/XS domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838161]; symbol=FDM1; hit=AT1G15910; species=arabidopsis; confidence=low
产物	XH/XS domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838161]; symbol=FDM1; hit=AT1G15910; species=arabidopsis; confidence=low
Arabidopsis	`AT1G15910` (FDM1) XH/XS domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838161] identity=49.2; qcov=0.351; evalue=3.91e-65; confidence=low
Rice	`Os01g0126600` (OsFDML2) - identity=50.4; qcov=0.351; evalue=2.98e-62; confidence=low
GO	GO:0080188 (gene silencing by siRNA-directed DNA methylation)
KEGG	-
Pfam	PF03469 (XH); PF29561 (DUF8566)
InterPro	-
eggNOG	-
NR	GeneID:130994824

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057775882.1`
2	Chromosome	染色体	0.00000	`XP_057775882.1`
3	Centromere	着丝粒	0.00000	`XP_057775882.1`
4	Chromatin	染色质	0.00000	`XP_057775882.1`
5	Telomere	端粒	0.00000	`XP_057775882.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:55363714`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A10,B17,C80
`Chr7:55363717`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B51
`Chr7:55363726`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B50,C14,C42
`Chr7:55363777`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B137,B70
`Chr7:55363827`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B111,B23,B29,C15,C25
`Chr7:55363945`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A3,B10,B5,C4
`Chr7:55363994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B68,C82
`Chr7:55364522`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr7:55364611`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B50,C14,C42
`Chr7:55364943`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C70
`Chr7:55365250`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A13,B112,B88
`Chr7:55365318`	`C`	`CT`	1bp_insertion	frameshift_variant	5	A22,B47,B81,C59,C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775882.1

716 aa

358

716

DUF8566

PF29561 DUF8566 126-328 aa PF03469 XH 584-714 aa

XP_057775883.1

696 aa

348

696

DUF8566

PF29561 DUF8566 106-308 aa PF03469 XH 564-694 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775882.1`	Pfam	`PF29561`	DUF8566	Domain	126	328	2.6e-48	165.2	Domain of unknown function (DUF8566)
`XP_057775882.1`	Pfam	`PF03469`	XH	Domain	584	714	6.8e-54	182.1	XH domain
`XP_057775883.1`	Pfam	`PF29561`	DUF8566	Domain	106	308	2.7e-48	165.2	Domain of unknown function (DUF8566)
`XP_057775883.1`	Pfam	`PF03469`	XH	Domain	564	694	7.9e-54	181.9	XH domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057919900.1
GCTGATAAAAATTATTCTTCTCCTCCGGTTTGAGGTTCGTATCAACGATTTACAGTCGACACACTCAATCGACTCCATTCATTTTGCTTGGGCTATGGTGCCGACAAAATCGAACCCACCCGTCAATGAGGGCGCAAACGTTGCCGGCTGTACAACAGAAAAATCAGTAACTATTGGAGAATCGAGCACAATGAGCATTGAAGGCGCTGCTCGTAAGCGAAAACACAAGGAATTGGCCACACGGAATGTGGGTGTGGTTA...

XM_057919899.1
GCTGATAAAAATTATTCTTCTCCTCCGGTTTGAGGTTCGTATCAACGATTTACAGTCGACACACTCAATCGACTCCATTCATTTTGCTTGGGCTATGGTGCCGACAAAATCGAACCCACCCGTCAATGAGGGCGCAAACGTTGCCGGCTGTACAACAGAAAAATCAGTAACTATTGGAGAATCGAGCACAATGAGCATTGAAGTGCGTACAAAACATAGGAATGATCAGAAATTGGCCGAATTTAAAACTGGTGTTGTCG...

CDS

2 records

下载 CDS FASTA

LOC130994824
ATGGTGCCGACAAAATCGAACCCACCCGTCAATGAGGGCGCAAACGTTGCCGGCTGTACAACAGAAAAATCAGTAACTATTGGAGAATCGAGCACAATGAGCATTGAAGGCGCTGCTCGTAAGCGAAAACACAAGGAATTGGCCACACGGAATGTGGGTGTGGTTATTCGAGAGAATAATCATGTCGTAGCAGCGGCTGAAGATCTTTCTTCAGCCGCTGACACGAAGAAAATGCGCTATGAAAAAAGGAAGGCTGCTCT...

LOC130994824
ATGGTGCCGACAAAATCGAACCCACCCGTCAATGAGGGCGCAAACGTTGCCGGCTGTACAACAGAAAAATCAGTAACTATTGGAGAATCGAGCACAATGAGCATTGAAGTGCGTACAAAACATAGGAATGATCAGAAATTGGCCGAATTTAAAACTGGTGTTGTCGAAGGCGCTGCTCGTAAGCGAAAACACAAGGAATTGGCCACACGGAATGTGGGTGTGGTTATTCGAGAGAATAATCATGTCGTAGCAGCGGCTGA...

Protein

2 records

下载 Protein FASTA

XP_057775882.1
MVPTKSNPPVNEGANVAGCTTEKSVTIGESSTMSIEVRTKHRNDQKLAEFKTGVVEGAARKRKHKELATRNVGVVIRENNHVVAAAEDLSSAADTKKMRYEKRKAALVNYKKLVVKPAEDYPSLFTRTTPCALLKAIGEMNDLQQQSVVGLGFEHVLDLPIQDLPGKLSYWVLDSFNGRRCEVVLPDGRSIPVTEDDVRRVLGFPKGDRDMVLLNREENTGLYEQWKQLFPGKNPKNIKINEVKDAMLACVDGGRWFKIH...

XP_057775883.1
MVPTKSNPPVNEGANVAGCTTEKSVTIGESSTMSIEGAARKRKHKELATRNVGVVIRENNHVVAAAEDLSSAADTKKMRYEKRKAALVNYKKLVVKPAEDYPSLFTRTTPCALLKAIGEMNDLQQQSVVGLGFEHVLDLPIQDLPGKLSYWVLDSFNGRRCEVVLPDGRSIPVTEDDVRRVLGFPKGDRDMVLLNREENTGLYEQWKQLFPGKNPKNIKINEVKDAMLACVDGGRWFKIHFLIMVAHCLIESTSNGCVFP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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