当前解析结果
SmilChr07G004216| 统一新 Gene ID | SmilChr07G004216 |
|---|---|
| 名称 | SmilChr07G004216 |
| 描述 | casein kinase 1-like protein HD16 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 54357098 - 54363156 / - |
| NCBI Gene ID | LOC130994825 |
|---|---|
| GeneID | 130994825 |
| locus_tag | - |
| NCBI Name | LOC130994825 |
| 原始查询 | LOC130994825 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | casein kinase 1-like protein HD16 |
| 产物 | casein kinase 1-like protein HD16 |
| Arabidopsis | AT2G25760 (AT2G25760)Protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:817118] identity=73.9; qcov=1; evalue=0; confidence=high |
| Rice | Os05g0200500- identity=82.4; qcov=0.86; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006897 (endocytosis); GO:0007165 (signal transduction); GO:0018105 (peptidyl-serine phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF17667 (Pkinase_fungal); PF24289 (DUF7477) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994825 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057775884.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057775884.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057775884.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775884.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775884.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:54357573 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B140,B44,B74,C36 |
Chr7:54357719 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr7:54358125 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr7:54358134 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr7:54358620 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr7:54359115 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B133,B16 |
Chr7:54359125 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,C14,C34 |
Chr7:54359143 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C14,C34 |
Chr7:54359341 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr7:54359706 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr7:54359724 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C14,C34 |
Chr7:54361360 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B113,B16 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775884.1PF00069
Pkinase 139-373 aa
PF07714
PK_Tyr_Ser-Thr 141-300 aa
PF17667
Pkinase_fungal 245-350 aa
PF24289
DUF7477 439-706 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775884.1 |
Pfam | PF00069 |
Pkinase | Domain | 139 | 373 | 1.3e-15 | 58.2 | Protein kinase domain |
XP_057775884.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 141 | 300 | 4.6e-07 | 30.1 | Protein tyrosine and serine/threonine kinase |
XP_057775884.1 |
Pfam | PF17667 |
Pkinase_fungal | Domain | 245 | 350 | 2.7e-08 | 33.7 | Fungal protein kinase |
XP_057775884.1 |
Pfam | PF24289 |
DUF7477 | Repeat | 439 | 706 | 2.6e-165 | 548.9 | Domain of unknown function (DUF7477) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。