Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004313`

染色体: Chr07 坐标: 55688877-55693389 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004313`
名称	SmilChr07G004313
描述	protein EARLY FLOWERING 3-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	55688877 - 55693389 / `-`

ID 对照

NCBI Gene ID	`LOC130994827`
GeneID	`130994827`
locus_tag	`-`
NCBI Name	`LOC130994827`
原始查询	`LOC130994827`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein EARLY FLOWERING 3-like
产物	protein EARLY FLOWERING 3-like
Arabidopsis	`AT2G25930` (ELF3) hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:817134] identity=39.1; qcov=0.873; evalue=3.31e-78; confidence=medium
Rice	`Os06g0142600` (HD3B) - identity=31.9; qcov=1.16; evalue=1.02e-69; confidence=low
GO	GO:2000028 (regulation of photoperiodism, flowering)
KEGG	smil04712 (Circadian rhythm - plant - Salvia miltiorrhiza (redroot sage))
Pfam	PF27565 (ELF3_helical)
InterPro	-
eggNOG	-
NR	GeneID:130994827

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057775886.1`
2	Chromosome	染色体	0.00000	`XP_057775886.1`
3	Centromere	着丝粒	0.00000	`XP_057775886.1`
4	Chromatin	染色质	0.00000	`XP_057775886.1`
5	Telomere	端粒	0.00000	`XP_057775886.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:55689033`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B67,C36
`Chr7:55689180`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:55689183`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:55689190`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr7:55689234`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr7:55689352`	`ACG`	`A`	2bp_deletion	frameshift_variant	2	C32,C68
`Chr7:55689352`	`ACG`	`A`	2bp_deletion	CDS_variant	2	C32,C68
`Chr7:55689373`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B134
`Chr7:55689373`	`AC`	`A`	1bp_deletion	CDS_variant	1	B134
`Chr7:55689412`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:55689444`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B57
`Chr7:55689450`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B132

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775886.1

689 aa

344

689

ELF3_helical

PF27565 ELF3_helical 315-341 aa

XP_057775887.1

689 aa

344

689

ELF3_helical

PF27565 ELF3_helical 315-341 aa

XP_057775888.1

686 aa

343

686

ELF3_helical

PF27565 ELF3_helical 312-338 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775886.1`	Pfam	`PF27565`	ELF3_helical	Domain	315	341	2.9e-14	53.2	ELF3 helical domain
`XP_057775887.1`	Pfam	`PF27565`	ELF3_helical	Domain	315	341	2.9e-14	53.2	ELF3 helical domain
`XP_057775888.1`	Pfam	`PF27565`	ELF3_helical	Domain	312	338	2.9e-14	53.3	ELF3 helical domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057919903.1
TGCTTTGCCCCATTTGTAGGAAGGGGAAATAAATAAACAGATTATCATTGGCTGCTGCAAAATAAATATTGCTTACGTGCCAAGGAATATCTCTGCTAAAATCGACTTTATTACAAGGAAAGATGCATAACAAAAAGAAATCAACATAGTAAAGTGTCCTAAAAAAATCCATTTATAAAAAACGTATTTTTATTTGATAGCCATCACTTTAGGAGGTTCTAGGTTCTGTTCTATCCAAACATTGGGTCCACAGAGTTTGC...

XM_057919904.1
AATAAATAAACAGATTATCATTGGCTGCTGCAAAATAAATATTGCTTACGTGCCAAGGAATATCTCTGCTAAAATCGACTTTATTACAAGGAAAGATGCATAACAAAAAGAAATCAACATAGTAAAGTGTCCTAAAAAAATCCATTTATAAAAAACGTATTTTTATTTGATAGCCATCACTTTAGGAGGTTCTAGGTTCTGTTCTATCCAAACATTGGGTCCACAGAGTTTGCGCTTTTGCTCTGCCCTTTTTCAAACGC...

CDS

3 records

下载 CDS FASTA

LOC130994827
ATGAAGAGAGGGAAAGATGAAGCGAAGATCACAGGGCCTATGTTTCCAAGGCTCCATGTGAATGATACTGAGAAAGGAGGGCCAAGAGCTCCTCCTAGAAATAAGATGGCTCTTTATGAGCAGCTCAGCATTCCTTCTCAGAGATTCAGCCATTCTGTTCCACCCCAAAATTCGAATTCGGAGCACGAGTTGGAGCAGGGGGTTGCAAATGAAAGGAGTACATTTTTCTCATATCAGCTGCCTACCAGACATCCATCGGA...

LOC130994827
ATGAAGAGAGGGAAAGATGAAGCGAAGATCACAGGGCCTATGTTTCCAAGGCTCCATGTGAATGATACTGAGAAAGGAGGGCCAAGAGCTCCTCCTAGAAATAAGATGGCTCTTTATGAGCAGCTCAGCATTCCTTCTCAGAGATTCAGCCATTCTGTTCCACCCCAAAATTCGAATTCGGAGCACGAGTTGGAGCAGGATTCGCAGGGGGTTGCAAATGAAAGGAGTACATTTTTCTCATATCAGCTGCCTACCAGACA...

Protein

3 records

下载 Protein FASTA

XP_057775886.1
MKRGKDEAKITGPMFPRLHVNDTEKGGPRAPPRNKMALYEQLSIPSQRFSHSVPPQNSNSEHELEQDSQGVANERSTFFSYQLPTRHPSEKLYSQFSDFVTPLTQEGQKKKSDEEDFRVPIFNHSVQSRECGKNGNDVEQEKVPLSNPSDAECPSKFHKYRKQVGKSQTEENSKETATDRVSNSSSIARAEGLKKKTDTSVSREPRDTPANTSVEPDVHADSEHARNRRATSALAESSAALDETISHPSRDQRNSRDMEN...

XP_057775887.1
MKRGKDEAKITGPMFPRLHVNDTEKGGPRAPPRNKMALYEQLSIPSQRFSHSVPPQNSNSEHELEQDSQGVANERSTFFSYQLPTRHPSEKLYSQFSDFVTPLTQEGQKKKSDEEDFRVPIFNHSVQSRECGKNGNDVEQEKVPLSNPSDAECPSKFHKYRKQVGKSQTEENSKETATDRVSNSSSIARAEGLKKKTDTSVSREPRDTPANTSVEPDVHADSEHARNRRATSALAESSAALDETISHPSRDQRNSRDMEN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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