当前解析结果
SmilChr01G003652| 统一新 Gene ID | SmilChr01G003652 |
|---|---|
| 名称 | SmilChr01G003652 |
| 描述 | eukaryotic translation initiation factor 5B-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 54982382 - 54989938 / + |
| NCBI Gene ID | LOC130994837 |
|---|---|
| GeneID | 130994837 |
| locus_tag | - |
| NCBI Name | LOC130994837 |
| 原始查询 | LOC130994837 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | eukaryotic translation initiation factor 5B-like |
| 产物 | eukaryotic translation initiation factor 5B-like |
| Arabidopsis | AT1G76810 (AT1G76810)eukaryotic translation initiation factor 2 (eIF-2) family protein [Source:NCBI gene (formerly Entrezgene);Acc:844015] identity=65.3; qcov=0.784; evalue=0; confidence=high |
| Rice | Os05g0592600- identity=64.3; qcov=0.772; evalue=0; confidence=high |
| GO | GO:0003743 (translation initiation factor activity); GO:0003924 (GTPase activity); GO:0005525 (GTP binding) |
| KEGG | - |
| Pfam | PF00009 (GTP_EFTU); PF01926 (MMR_HSR1); PF11987 (IF-2); PF14578 (GTP_EFTU_D4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994837 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057775917.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057775917.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057775917.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775917.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775917.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:54983056 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr1:54983234 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A3,B37 |
Chr1:54983600 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr1:54983750 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr1:54983829 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,C85 |
Chr1:54983875 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr1:54983924 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr1:54984051 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr1:54984220 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C22,C31 |
Chr1:54984256 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B31,B48 |
Chr1:54984421 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B5 |
Chr1:54984489 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,B128,C1,C16 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775917.1PF00009
GTP_EFTU 722-931 aa
PF01926
MMR_HSR1 725-845 aa
PF11987
IF-2 1048-1160 aa
PF14578
GTP_EFTU_D4 1181-1272 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775917.1 |
Pfam | PF00009 |
GTP_EFTU | Domain | 722 | 931 | 8.8e-33 | 114.2 | Elongation factor Tu GTP binding domain |
XP_057775917.1 |
Pfam | PF01926 |
MMR_HSR1 | Family | 725 | 845 | 5.6e-06 | 27.2 | 50S ribosome-binding GTPase |
XP_057775917.1 |
Pfam | PF11987 |
IF-2 | Domain | 1048 | 1160 | 1.5e-21 | 77.2 | Translation-initiation factor 2 |
XP_057775917.1 |
Pfam | PF14578 |
GTP_EFTU_D4 | Domain | 1181 | 1272 | 7.2e-15 | 55.4 | Elongation factor Tu domain 4 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。