当前解析结果
SmilChr07G004144| 统一新 Gene ID | SmilChr07G004144 |
|---|---|
| 名称 | SmilChr07G004144 |
| 描述 | signal peptide peptidase-like 2 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 53258439 - 53268046 / + |
| NCBI Gene ID | LOC130994855 |
|---|---|
| GeneID | 130994855 |
| locus_tag | - |
| NCBI Name | LOC130994855 |
| 原始查询 | LOC130994855 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | signal peptide peptidase-like 2 |
| 产物 | signal peptide peptidase-like 2 |
| Arabidopsis | AT1G63690 (SPPL2)SIGNAL PEPTIDE PEPTIDASE-LIKE 2 [Source:NCBI gene (formerly Entrezgene);Acc:842673] identity=80.1; qcov=0.961; evalue=0; confidence=high |
| Rice | Os06g0730900 (SPPL5)- identity=74; qcov=0.935; evalue=0; confidence=high |
| GO | GO:0005765 (lysosomal membrane); GO:0030660 (Golgi-associated vesicle membrane); GO:0033619 (membrane protein proteolysis); GO:0042500 (aspartic endopeptidase activity, intramembrane cleaving); GO:0098553 (lumenal side of endoplasmic reticulum membrane); GO:0098554 (cytoplasmic side of endoplasmic reticulum membrane) |
| KEGG | - |
| Pfam | PF02225 (PA); PF04258 (Peptidase_A22B) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994855 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vesicle | 囊泡 | 0.40000 | XP_057775942.1 |
| 2 | Endosome | 内体 | 0.40000 | XP_057775942.1 |
| 3 | Endosome membrane | 内体膜 | 0.40000 | XP_057775942.1 |
| 4 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057775942.1 |
| 5 | Cell membrane | 细胞膜 | 0.20000 | XP_057775942.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:53258729 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A16,B6,C63,C67,C83 |
Chr7:53259776 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:53259874 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr7:53260542 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:53260594 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr7:53261080 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr7:53261637 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr7:53261668 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B111 |
Chr7:53261717 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B127,C60 |
Chr7:53261737 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,B61 |
Chr7:53264361 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr7:53264499 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B122,B4,B65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775942.1PF02225
PA 90-167 aa
PF04258
Peptidase_A22B 243-521 aa
XP_057775944.1PF02225
PA 90-167 aa
PF04258
Peptidase_A22B 243-521 aa
XP_057775945.1PF02225
PA 90-167 aa
PF04258
Peptidase_A22B 243-521 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775942.1 |
Pfam | PF02225 |
PA | Domain | 90 | 167 | 6.2e-14 | 52.6 | PA domain |
XP_057775942.1 |
Pfam | PF04258 |
Peptidase_A22B | Family | 243 | 521 | 9e-102 | 341.3 | Signal peptide peptidase |
XP_057775944.1 |
Pfam | PF02225 |
PA | Domain | 90 | 167 | 6.2e-14 | 52.6 | PA domain |
XP_057775944.1 |
Pfam | PF04258 |
Peptidase_A22B | Family | 243 | 521 | 9e-102 | 341.3 | Signal peptide peptidase |
XP_057775945.1 |
Pfam | PF02225 |
PA | Domain | 90 | 167 | 6.2e-14 | 52.6 | PA domain |
XP_057775945.1 |
Pfam | PF04258 |
Peptidase_A22B | Family | 243 | 521 | 9e-102 | 341.3 | Signal peptide peptidase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。