当前解析结果
SmilChr07G004400| 统一新 Gene ID | SmilChr07G004400 |
|---|---|
| 名称 | SmilChr07G004400 |
| 描述 | probable disease resistance protein At1g58602 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 56644060 - 56646294 / + |
| NCBI Gene ID | LOC130994858 |
|---|---|
| GeneID | 130994858 |
| locus_tag | - |
| NCBI Name | LOC130994858 |
| 原始查询 | LOC130994858 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58602 |
| 产物 | probable disease resistance protein At1g58602 |
| Arabidopsis | AT1G58390 (AT1G58390)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=32.9; qcov=1.01; evalue=3.61e-54; confidence=low |
| Rice | Os10g0358200- identity=27.2; qcov=1.02; evalue=2.85e-27; confidence=low |
| GO | GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994858 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.40000 | XP_057775948.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057775948.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057775948.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057775948.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775948.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:56644342 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A6,B118,C4 |
Chr7:56644394 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A6,B118,C4 |
Chr7:56644401 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | A25,B70 |
Chr7:56644401 |
AT |
A |
1bp_deletion | CDS_variant | 2 | A25,B70 |
Chr7:56644404 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | A25,B70 |
Chr7:56644404 |
AC |
A |
1bp_deletion | CDS_variant | 2 | A25,B70 |
Chr7:56644406 |
A |
AGG |
2bp_insertion | frameshift_variant | 2 | A25,B70 |
Chr7:56644406 |
A |
AGG |
2bp_insertion | CDS_variant | 2 | A25,B70 |
Chr7:56644413 |
T |
TGA |
2bp_insertion | frameshift_variant | 47 | A1,A10,A18,A2,A21,A3,A5,A6,A7,A9,B101,B106,B108,B110,B115,B125,B129,B131,B135,B2,B20,B26,B32,B38,B39,B4,B40,B41,B5,B55,B66,B67,B69,B85,C13,C22,C27,C29,C3,C43,C47,C51,C6,C60,C76,C84,C87 |
Chr7:56644415 |
AGG |
A |
2bp_deletion | frameshift_variant | 47 | A1,A10,A18,A2,A21,A3,A5,A6,A7,A9,B101,B106,B108,B110,B115,B125,B129,B131,B135,B2,B20,B26,B32,B38,B39,B4,B40,B41,B5,B55,B66,B67,B69,B85,C13,C22,C27,C29,C3,C43,C47,C51,C6,C60,C76,C84,C87 |
Chr7:56644450 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B92,C49,C54 |
Chr7:56644459 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775948.1PF23559
WHD_DRP 3-80 aa
PF23598
LRR_14 149-456 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775948.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 3 | 80 | 4.4e-11 | 43.4 | Disease resistance protein Winged helix domain |
XP_057775948.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 149 | 456 | 3.5e-22 | 79.4 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。