当前解析结果
SmilChr07G004327| 统一新 Gene ID | SmilChr07G004327 |
|---|---|
| 名称 | SmilChr07G004327 |
| 描述 | beta-fructofuranosidase, insoluble isoenzyme CWINV1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 55827361 - 55830283 / - |
| NCBI Gene ID | LOC130994859 |
|---|---|
| GeneID | 130994859 |
| locus_tag | - |
| NCBI Name | LOC130994859 |
| 原始查询 | LOC130994859 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-fructofuranosidase, insoluble isoenzyme CWINV1-like |
| 产物 | beta-fructofuranosidase%2C insoluble isoenzyme CWINV1-like |
| Arabidopsis | AT3G13790 (ATBFRUCT1)Glycosyl hydrolases family 32 protein [Source:NCBI gene (formerly Entrezgene);Acc:820591] identity=52.3; qcov=1.03; evalue=0; confidence=high |
| Rice | Os01g0966700 (OsCIN4)- identity=48.3; qcov=1.02; evalue=7.65e-176; confidence=high |
| GO | GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005975 (carbohydrate metabolic process) |
| KEGG | - |
| Pfam | PF00251 (Glyco_hydro_32N); PF08244 (Glyco_hydro_32C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994859 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.60000 | XP_057775949.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057775949.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057775949.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057775949.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775949.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:55827565 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,B1 |
Chr7:55827583 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr7:55827598 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr7:55827600 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:55827636 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B18,B67,C43 |
Chr7:55827644 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B67,C43 |
Chr7:55827659 |
C |
CT |
1bp_insertion | frameshift_variant | 9 | B3,B63,B79,C11,C39,C44,C56,C69,D10 |
Chr7:55827669 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A7,B22,C72,C76,C9 |
Chr7:55827702 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C1,C68 |
Chr7:55827723 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:55828412 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A22,A7,B20,B30,B47 |
Chr7:55828434 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057775949.1PF00251
Glyco_hydro_32N 1-289 aa
PF08244
Glyco_hydro_32C 292-484 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775949.1 |
Pfam | PF00251 |
Glyco_hydro_32N | Repeat | 1 | 289 | 6.6e-83 | 279.5 | Glycosyl hydrolases family 32 N-terminal domain |
XP_057775949.1 |
Pfam | PF08244 |
Glyco_hydro_32C | Domain | 292 | 484 | 3e-24 | 86.6 | Glycosyl hydrolases family 32 C terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。