同源 qcov 为最佳单个 HSP 在查询序列上的坐标跨度/序列长度;置信度是规则分级,不是已验证的正交关系。

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及有 accession 序列支持的文献基因名查询;未闭环名称仅提供候选导航。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G004288

染色体: Chr07 坐标: 55447191-55450863 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G004288
名称SmilChr07G004288
描述uncharacterized SmilChr07G004288
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向55447191 - 55450863 / -

ID 对照

NCBI Gene IDLOC130994905
GeneID130994905
locus_tag-
NCBI NameLOC130994905
原始查询LOC130994905

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述intracellular protein transporter [Source:NCBI gene (formerly Entrezgene);Acc:828873]; symbol=AT4G27620; hit=AT4G27620; species=arabidopsis; confidence=high
产物intracellular protein transporter [Source:NCBI gene (formerly Entrezgene);Acc:828873]; symbol=AT4G27620; hit=AT4G27620; species=arabidopsis; confidence=high
ArabidopsisAT4G27620 (AT4G27620)
intracellular protein transporter [Source:NCBI gene (formerly Entrezgene);Acc:828873]
identity=60.66; qcov=0.935; evalue=3.26e-132; confidence=high
RiceOs02g0582200
-
identity=54.47; qcov=0.952; evalue=1.11e-114; confidence=high
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130994905

打开注释模块

非零投票定位候选(最多五项)

Rank定位位置中文五折投票比例Protein ID
1 Nucleus membrane 核膜 0.60000 XP_057776018.1
2 Nucleus 细胞核 0.20000 XP_057776018.1
3 Endoplasmic reticulum 内质网 0.20000 XP_057776018.1
4 Endoplasmic reticulum membrane 内质网膜 0.20000 XP_057776018.1
5 Peroxisome 过氧化物酶体 0.20000 XP_057776020.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:55447563 C T EMS_canonical_SNV CDS_variant 2 B122,B31
Chr7:55447701 G A EMS_canonical_SNV CDS_variant 2 B12,B55
Chr7:55447704 C T EMS_canonical_SNV CDS_variant 1 C5
Chr7:55447734 GT G 1bp_deletion frameshift_variant 2 C21,D1
Chr7:55447734 GT G 1bp_deletion CDS_variant 2 C21,D1
Chr7:55447797 G A EMS_canonical_SNV CDS_variant 5 B20,B53,B60,B78,C59
Chr7:55447992 C T EMS_canonical_SNV CDS_variant 4 B40,B94,C21,C62
Chr7:55448010 C T EMS_canonical_SNV CDS_variant 2 B124,B71
Chr7:55448130 G A EMS_canonical_SNV CDS_variant 2 B104,C13
Chr7:55448790 G A EMS_canonical_SNV CDS_variant 5 B40,B94,C21,C62,D1
Chr7:55448805 G A EMS_canonical_SNV CDS_variant 2 C43,C65
Chr7:55448913 C T EMS_canonical_SNV CDS_variant 4 A11,B16,B89,C34

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057920035.1
ATTCTTTACTTCCAATTTGAGTATGAGTGGTTTACCACTTTTTCATAGCTTATTGTTGTTTCCCCTATAATTTAAAATTTATTATGGAGATTCAGAATATCAAATTCTTTTATTCACTAAACCAATCACATTCACATTAATAATAAATTAATTCCTCAATTTATAAATTACGAGTAACGCCGATCGCGAATATATATTTACTATTTTTAGCTGCATAATTAAAATCCTAAATAACTGTTTTTTTTTTTTTTTTTTTTTTG...
XM_057920037.1
TTATTATGGAGATTCAGAATATCAAATTCTTTTATTCACTAAACCAATCACATTCACATTAATAATAAATTAATTCCTCAATTTATAAATTACGAGTAACGCCGATCGCGAATATATATTTACTATTTTTAGCTGCATAATTAAAATCCTAAATAACTGTTTTTTTTTTTTTTTTTTTTTTGAAGCATAAATAACTGATAATTTTAGTTCAACAAATTAGTAGCAAAAACTGCACAAGAATTAGGATGTTGAACAACTAG...

CDS

4 records

下载 CDS FASTA
lcl|NC_080393.1_cds_XP_057776020.1_39624
ATGCCGGAAAAGCTTTTGGTCTGCACTTCTGTCGCTTTAGCAATGAAGCCAAGAGCCACCGAGTCACCTCGGAGGTCAAGAACTGTTCAGGGGGAGGGACCAAATTGGATCCTTATTGCAGGGAGTGCACTGCTTAGTACATTGTCAGTTCGCCTTGGATATAAGCTCAAACAGGTCCTTGATGCTAAACAACTGAACAACAGTAGTCCAGTTAATGGAAAATCCACTAATGGCAAGAAGTCGGGAAGCTGCCCTATGCA...
lcl|NC_080393.1_cds_XP_057776021.1_39625
ATGCCGGAAAAGCTTTTGGTCTGCACTTCTGTCGCTTTAGCAATGAAGCCAAGAGCCACCGAGTCACCTCGGAGGTCAAGAACTGTTCAGGGGGAGGGACCAAATTGGATCCTTATTGCAGGGAGTGCACTGCTTAGTACATTGTCAGTTCGCCTTGGATATAAGCTCAAACAGGTCCTTGATGCTAAACAACTGAACAACAGTAGTCCAGTTAATGGAAAATCCACTAATGGCAAGAAGTCGGGAAGCTGCCCTATGCA...

Protein

4 records

下载 Protein FASTA
XP_057776018.1
MPEKLLVCTSVALAMKPRATESPRRSRTVQGEGPNWILIAGSALLSTLSVRLGYKLKQVLDAKQLNNSSPGLKVNGKSTNGKKSGSCPMHSNAFCFPQDEDVCYNHYSGSRDVMEIKPHVNGQMMAEPEMALPLVTVPTSEFNKENGVMWSSSPDRLELPQKPFHQSNSSDSPCVSESGSDIFSKREVIQKLRQQLKRRDDMILEMQDQIAEVQNSLAAQVSHSSHLQSLLDIANRDLFDSEREVQRLRKAIADHCVGHV...
XP_057776019.1
MPEKLLVCTSVALAMKPRATESPRRSRTVQGEGPNWILIAGSALLSTLSVRLGYKLKQVLDAKQLNNSSPGLKVNGKSTNGKKSGSCPMHSNAFCFPQDEDVCYNHYSGSRDVMEIKPHVNGQMMAEPEMALPLVTVPTSEFNKENGVMWSSSPDRLELPQKPFHQSNSSDSPCVSESGSDIFSKREVIQKLRQQLKRRDDMILEMQDQIAEVQNSLAAQVSHSSHLQSLLDIANRDLFDSEREVQRLRKAIADHCVGHV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器