Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004340`

染色体: Chr07 坐标: 55948687-55952034 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004340`
名称	SmilChr07G004340
描述	uncharacterized SmilChr07G004340
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	55948687 - 55952034 / `-`

ID 对照

NCBI Gene ID	`LOC130994911`
GeneID	`130994911`
locus_tag	`-`
NCBI Name	`LOC130994911`
原始查询	`LOC130994911`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	rhomboid family protein [Source:NCBI gene (formerly Entrezgene);Acc:831054]; symbol=AT5G11810; hit=AT5G11810; species=arabidopsis; confidence=high
产物	rhomboid family protein [Source:NCBI gene (formerly Entrezgene);Acc:831054]; symbol=AT5G11810; hit=AT5G11810; species=arabidopsis; confidence=high
Arabidopsis	`AT5G11810` (AT5G11810) rhomboid family protein [Source:NCBI gene (formerly Entrezgene);Acc:831054] identity=48.1; qcov=1; evalue=6.63e-97; confidence=high
Rice	`Os02g0135600` - identity=41.3; qcov=1.08; evalue=4.15e-75; confidence=medium
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130994911

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.60000	`XP_057776028.1`
2	Cytoplasm	细胞质	0.60000	`XP_057776028.1`
3	Cytosol	细胞质基质	0.20000	`XP_057776028.1`
4	Chromosome	染色体	0.00000	`XP_057776028.1`
5	Centromere	着丝粒	0.00000	`XP_057776028.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:55948996`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B107,B49,C40,C50,C54
`Chr7:55949967`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B128,B131
`Chr7:55949990`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B58,B90,C37,C80,D4
`Chr7:55950004`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B58,B90,C37,C80,D4
`Chr7:55950109`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A23,B103,B106,C86
`Chr7:55950127`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B140,B74,C34,C82
`Chr7:55950303`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr7:55950338`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A1,B102
`Chr7:55950537`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A15,B102
`Chr7:55950708`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A1,C3,C64
`Chr7:55951881`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr7:55951931`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B134

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920046.1
ATGCAATCTCTTCTTACACAGTTACACTTGTATACAACATACAAGCATATACATACAGATAGAGAGAGATGGCAGACAAGCCGAGCAGAGCTCTCGTATTGTACGGTGACGGGCTGGCCCGATTCCTCAGCCCGGCCCAAACTCACCTCAATTCTCTCGCTTCTCGGGCTCTCTGCGGTTTCCTCGCTCTCCCTCATTCTCCTCAATCAGAAAATGAGGATATGAGGATAGTTAGGGAGTTTGCAGAGTTGCTTGATGCG...

XM_057920045.1
ACTTGTATACAACATACAAGCATATACATACAGATAGAGAGAGATGGCAGACAAGCCGAGCAGAGCTCTCGTATTGTACGGTGACGGGCTGGCCCGATTCCTCAGCCCGGCCCAAACTCACCTCAATTCTCTCGCTTCTCGGGCTCTCTGCGGTTTCCTCGCTCTCCCTCATTCTCCTCAATCAGGGAATTACATTGCAGAAAATGAGGATATGAGGATAGTTAGGGAGTTTGCAGAGTTGCTTGATGCGAACGAAGCAT...

CDS

2 records

下载 CDS FASTA

LOC130994911
ATGGCAGACAAGCCGAGCAGAGCTCTCGTATTGTACGGTGACGGGCTGGCCCGATTCCTCAGCCCGGCCCAAACTCACCTCAATTCTCTCGCTTCTCGGGCTCTCTGCGGTTTCCTCGCTCTCCCTCATTCTCCTCAATCAGAAAATGAGGATATGAGGATAGTTAGGGAGTTTGCAGAGTTGCTTGATGCGAACGAAGCATACGAAAGCTCGGTCGCAACAGGAATACGTGAGGATACACCTCAAGAAAAGTGTGCATT...

LOC130994911
ATGGCAGACAAGCCGAGCAGAGCTCTCGTATTGTACGGTGACGGGCTGGCCCGATTCCTCAGCCCGGCCCAAACTCACCTCAATTCTCTCGCTTCTCGGGCTCTCTGCGGTTTCCTCGCTCTCCCTCATTCTCCTCAATCAGGGAATTACATTGCAGAAAATGAGGATATGAGGATAGTTAGGGAGTTTGCAGAGTTGCTTGATGCGAACGAAGCATACGAAAGCTCGGTCGCAACAGGAATACGTGAGGATACACCTCA...

Protein

2 records

下载 Protein FASTA

XP_057776028.1
MADKPSRALVLYGDGLARFLSPAQTHLNSLASRALCGFLALPHSPQSGNYIAENEDMRIVREFAELLDANEAYESSVATGIREDTPQEKCAFPSVAERFMGMKAAIVTDNLSMKSFGGMMVGFKVFSWNEMSENDGSSAESSHLASELLKLLGFQEGQILDSSIYELVFVHIGANTKMNGVAGVDLVNCLVGDLLHKASSESYIGSRLHTSVIMSYGATLGDDDLHLSISNATSEDDGELSRLIPRQSYMMKAGKPRENI...

XP_057776029.1
MADKPSRALVLYGDGLARFLSPAQTHLNSLASRALCGFLALPHSPQSENEDMRIVREFAELLDANEAYESSVATGIREDTPQEKCAFPSVAERFMGMKAAIVTDNLSMKSFGGMMVGFKVFSWNEMSENDGSSAESSHLASELLKLLGFQEGQILDSSIYELVFVHIGANTKMNGVAGVDLVNCLVGDLLHKASSESYIGSRLHTSVIMSYGATLGDDDLHLSISNATSEDDGELSRLIPRQSYMMKAGKPRENIRQHCP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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