Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004160`

染色体: Chr07 坐标: 53487312-53500964 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004160`
名称	SmilChr07G004160
描述	short-chain dehydrogenase TIC 32, chloroplastic-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	53487312 - 53500964 / `+`

ID 对照

NCBI Gene ID	`LOC130994914`
GeneID	`130994914`
locus_tag	`-`
NCBI Name	`LOC130994914`
原始查询	`LOC130994914`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	short-chain dehydrogenase TIC 32, chloroplastic-like
产物	short-chain dehydrogenase TIC 32%2C chloroplastic-like
Arabidopsis	`AT4G11410` (AT4G11410) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826745] identity=69.9; qcov=0.99; evalue=2.18e-163; confidence=high
Rice	`Os09g0570300` - identity=68.7; qcov=0.984; evalue=6.21e-157; confidence=high
GO	-
KEGG	-
Pfam	PF00106 (adh_short); PF01370 (Epimerase); PF08659 (KR); PF13561 (adh_short_C2)
InterPro	-
eggNOG	-
NR	GeneID:130994914

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057776032.1`
2	Mitochondrion	线粒体	0.40000	`XP_057776033.1`
3	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057776032.1`
4	Lipid droplet	脂滴	0.20000	`XP_057776035.1`
5	Nucleus	细胞核	0.00000	`XP_057776032.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:53489012`	`CA`	`C`	1bp_deletion	frameshift_variant	1	A19
`Chr7:53489012`	`CA`	`C`	1bp_deletion	CDS_variant	1	A19
`Chr7:53499696`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B88,C34
`Chr7:53500044`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr7:53500072`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B136,B7
`Chr7:53500221`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr7:53500261`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A24,A3
`Chr7:53500602`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B125
`Chr7:53500612`	`TCG`	`T`	2bp_deletion	frameshift_variant	7	B28,B35,B72,B8,C14,C64,C66
`Chr7:53500629`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A24,A3
`Chr7:53500652`	`T`	`TGG`	2bp_insertion	frameshift_variant	25	A18,A22,A4,A6,B106,B113,B45,B47,B49,B54,B61,B69,B79,B90,B92,C21,C29,C35,C52,C54,C56,C57,C9,D3,D9
`Chr7:53500656`	`AAC`	`A`	2bp_deletion	frameshift_variant	25	A18,A22,A4,A6,B106,B113,B45,B47,B49,B54,B61,B69,B79,B90,B92,C21,C29,C35,C52,C54,C56,C57,C9,D3,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776032.1

318 aa

159

318

adh_short

Epimerase

adh_short_C2

PF08659 KR 31-131 aa PF00106 adh_short 31-177 aa PF01370 Epimerase 33-216 aa PF13561 adh_short_C2 36-243 aa

XP_057776033.1

317 aa

158

317

adh_short

Epimerase

adh_short_C2

PF08659 KR 31-123 aa PF00106 adh_short 31-176 aa PF01370 Epimerase 33-215 aa PF13561 adh_short_C2 36-242 aa

XP_057776035.1

315 aa

158

315

adh_short

Epimerase

adh_short_C2

PF08659 KR 31-131 aa PF00106 adh_short 31-177 aa PF01370 Epimerase 33-216 aa PF13561 adh_short_C2 36-241 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776032.1`	Pfam	`PF08659`	KR	Family	31	131	2.3e-09	38.2	KR domain
`XP_057776032.1`	Pfam	`PF00106`	adh_short	Domain	31	177	3.8e-30	105.6	short chain dehydrogenase
`XP_057776032.1`	Pfam	`PF01370`	Epimerase	Family	33	216	7.5e-06	26.3	NAD dependent epimerase/dehydratase family
`XP_057776032.1`	Pfam	`PF13561`	adh_short_C2	Domain	36	243	1.3e-14	55.1	Enoyl-(Acyl carrier protein) reductase
`XP_057776033.1`	Pfam	`PF08659`	KR	Family	31	123	9.3e-08	32.9	KR domain
`XP_057776033.1`	Pfam	`PF00106`	adh_short	Domain	31	176	7.5e-27	94.8	short chain dehydrogenase
`XP_057776033.1`	Pfam	`PF01370`	Epimerase	Family	33	215	5.3e-06	26.7	NAD dependent epimerase/dehydratase family
`XP_057776033.1`	Pfam	`PF13561`	adh_short_C2	Domain	36	242	4.2e-12	46.9	Enoyl-(Acyl carrier protein) reductase
`XP_057776035.1`	Pfam	`PF08659`	KR	Family	31	131	2.2e-09	38.2	KR domain
`XP_057776035.1`	Pfam	`PF00106`	adh_short	Domain	31	177	5.5e-32	111.5	short chain dehydrogenase
`XP_057776035.1`	Pfam	`PF01370`	Epimerase	Family	33	216	6.1e-06	26.5	NAD dependent epimerase/dehydratase family
`XP_057776035.1`	Pfam	`PF13561`	adh_short_C2	Domain	36	241	9.1e-17	62.1	Enoyl-(Acyl carrier protein) reductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057920049.1
GAATCACATCAATAAAGTTGTGGCCAACACCATCTAAATAATTATCCAAAATTTAGAAGAAAATAAAACAAATAAATAAAATACAAGTTCGCAATTGATTCCCAGAAAGTTGTCGCACTTGGCAGCATATAACAGTAGTTGCATGTAGTTTCTCGCTCTTAATCTTTGAGAGAGAGAGAAAGATGTGGCTTTTCGGAAGGAGAGGGCAGTCGGGATTTTCAGCTAGCTCTACTGCAGAGGAAGTTACTCAAGGAGTTGAT...

XM_057920052.1
GAATCACATCAATAAAGTTGTGGCCAACACCATCTAAATAATTATCCAAAATTTAGAAGAAAATAAAACAAATAAATAAAATACAAGTTCGCAATTGATTCCCAGAAAGTTGTCGCACTTGGCAGCATATAACAGTAGTTGCATGTAGTTTCTCGCTCTTAATCTTTGAGAGAGAGAGAAAGATGTGGCTTTTCGGAAGGAGAGGGCAGTCGGGATTTTCAGCTAGCTCTACTGCAGAGGAAGTTACTCAAGGAGTTGAT...

CDS

3 records

下载 CDS FASTA

LOC130994914
ATGTGGCTTTTCGGAAGGAGAGGGCAGTCGGGATTTTCAGCTAGCTCTACTGCAGAGGAAGTTACTCAAGGAGTTGATGGCTCTGGCCTCACCGCCATCGTCACTGGAGCAACAAGTGGCATTGGAGAAGAAACTGCTCGAGTCCTGGCATTACGCGGTGTTCGTGTAATTATGGCAGTGCGTAATCTGGAGACCTCTAGAAAGATCAAAGAAACAATAATCAATGAATTCTCTGATGCTAAAATTGATGTTATGGAACT...

Protein

3 records

下载 Protein FASTA

XP_057776032.1
MWLFGRRGQSGFSASSTAEEVTQGVDGSGLTAIVTGATSGIGEETARVLALRGVRVIMAVRNLETSRKIKETIINEFSDAKIDVMELDLSSFASVRKFVSEYNSSRLPLNLLINNAGVMATPFMLSHDNIELQFATNHLGHFLLTNLLLETMKKTARESGKEGRIVNVSSESHRFGYREGIRFDKINDESSYNGWYAYGQSKLANILHANELARRFQLLQEEGIKITANSLHPGAISTNLLQHHGLLASIGQFLGEYFLK...

XP_057776033.1
MWLFGRRGQSGFSASSTAEEVTQGVDGSGLTAIVTGATSGIGEETARVLALRGVRVIMAVRNLETSRKIKETIINEFSDAKIDVMELDLSSFASVRKFVSEYNSSRLPLNLLINAGVMATPFMLSHDNIELQFATNHLGHFLLTNLLLETMKKTARESGKEGRIVNVSSESHRFGYREGIRFDKINDESSYNGWYAYGQSKLANILHANELARRFQLLQEEGIKITANSLHPGAISTNLLQHHGLLASIGQFLGEYFLKN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器