Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004164`

染色体: Chr07 坐标: 53520378-53524900 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004164`
名称	SmilChr07G004164
描述	short-chain dehydrogenase TIC 32, chloroplastic-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	53520378 - 53524900 / `+`

ID 对照

NCBI Gene ID	`LOC130994916`
GeneID	`130994916`
locus_tag	`-`
NCBI Name	`LOC130994916`
原始查询	`LOC130994916`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	short-chain dehydrogenase TIC 32, chloroplastic-like
产物	short-chain dehydrogenase TIC 32%2C chloroplastic-like
Arabidopsis	`AT4G11410` (AT4G11410) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826745] identity=75.4; qcov=0.964; evalue=7.05e-134; confidence=high
Rice	`Os09g0570300` - identity=69.6; qcov=0.988; evalue=2.49e-128; confidence=high
GO	-
KEGG	-
Pfam	PF00106 (adh_short); PF01370 (Epimerase); PF08659 (KR); PF13561 (adh_short_C2)
InterPro	-
eggNOG	-
NR	GeneID:130994916

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057776037.1`
2	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057776037.1`
3	Lipid droplet	脂滴	0.40000	`XP_057776037.1`
4	Cytosol	细胞质基质	0.20000	`XP_057776037.1`
5	Nucleus	细胞核	0.00000	`XP_057776037.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:53520500`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr7:53521735`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr7:53521750`	`ATG`	`A`	2bp_deletion	CDS_variant	1	C34
`Chr7:53522545`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B16,B23,B7,C34
`Chr7:53522592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C70
`Chr7:53523709`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr7:53523717`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A6,B119
`Chr7:53523734`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776037.1

315 aa

158

315

adh_short

Epimerase

adh_short_C2

PF00106 adh_short 32-177 aa PF08659 KR 33-129 aa PF01370 Epimerase 33-216 aa PF13561 adh_short_C2 36-242 aa

XP_057776038.1

253 aa

126

253

adh_short

Epimerase

adh_short_C2

PF00106 adh_short 32-177 aa PF08659 KR 33-129 aa PF01370 Epimerase 33-215 aa PF13561 adh_short_C2 36-240 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776037.1`	Pfam	`PF00106`	adh_short	Domain	32	177	1.4e-30	107.0	short chain dehydrogenase
`XP_057776037.1`	Pfam	`PF08659`	KR	Family	33	129	9.4e-07	29.6	KR domain
`XP_057776037.1`	Pfam	`PF01370`	Epimerase	Family	33	216	3.8e-05	23.9	NAD dependent epimerase/dehydratase family
`XP_057776037.1`	Pfam	`PF13561`	adh_short_C2	Domain	36	242	1.4e-15	58.3	Enoyl-(Acyl carrier protein) reductase
`XP_057776038.1`	Pfam	`PF00106`	adh_short	Domain	32	177	5.8e-31	108.2	short chain dehydrogenase
`XP_057776038.1`	Pfam	`PF08659`	KR	Family	33	129	5.9e-07	30.3	KR domain
`XP_057776038.1`	Pfam	`PF01370`	Epimerase	Family	33	215	2.1e-05	24.8	NAD dependent epimerase/dehydratase family
`XP_057776038.1`	Pfam	`PF13561`	adh_short_C2	Domain	36	240	9.6e-16	58.8	Enoyl-(Acyl carrier protein) reductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920054.1
GACTTCAATTTCTTTCTGCATATAATAATCTAAATCACAATTTCTTTCTGTAGCAGCATTTAGTAGTTGCATCTACTTTCTCGCTCTAAATCTCTAAACAAAGAAACAAGATGTGGATTTTCGGAAGAAAAGGGCCGTCTGGATTTTCAGCCTGCTCTACTGCAGAGGAAGTTACTCAAGGAATCGATGGCTCTGCCCTCTCCGCCATTGTCACTGGAGCATCAAGTGGCATTGGAGCAGAAACTGCTCGAGTCCTGGCA...

XM_057920055.1
TCACAATTTCTTTCTGTAGCAGCATTTAGTAGTTGCATCTACTTTCTCGCTCTAAATCTCTAAACAAAGAAACAAGATGTGGATTTTCGGAAGAAAAGGGCCGTCTGGATTTTCAGCCTGCTCTACTGCAGAGGAAGTTACTCAAGGAATCGATGGCTCTGCCCTCTCCGCCATTGTCACTGGAGCATCAAGTGGCATTGGAGCAGAAACTGCTCGAGTCCTGGCATTACATGGTGTTCATGTAATCATGGCAGTGCGTA...

CDS

2 records

下载 CDS FASTA

LOC130994916
ATGTGGATTTTCGGAAGAAAAGGGCCGTCTGGATTTTCAGCCTGCTCTACTGCAGAGGAAGTTACTCAAGGAATCGATGGCTCTGCCCTCTCCGCCATTGTCACTGGAGCATCAAGTGGCATTGGAGCAGAAACTGCTCGAGTCCTGGCATTACATGGTGTTCATGTAATCATGGCAGTGCGTAATGTGGAGAGCTGTAATAAGGTTAAAGAAACAATAATCAAAGAGTTCCCTGAAGCTAAAATTGATGTTATGGAACT...

Protein

2 records

下载 Protein FASTA

XP_057776037.1
MWIFGRKGPSGFSACSTAEEVTQGIDGSALSAIVTGASSGIGAETARVLALHGVHVIMAVRNVESCNKVKETIIKEFPEAKIDVMELDLASFASVRKFASEYNSLGLPLNLLINNAGIMATPFMLSQDNIELQFATNHLGHFLLTNLLLENMKKTAHESGKEGRIVNVSSEGHRHPYREGIRFDKINDNSSYQTLYAYGQSKLANILHANELTRRFQEEGIKITANSLHPGAIATNLLRHHKILEGLLMWFVKYLIKTIP...

XP_057776038.1
MWIFGRKGPSGFSACSTAEEVTQGIDGSALSAIVTGASSGIGAETARVLALHGVHVIMAVRNVESCNKVKETIIKEFPEAKIDVMELDLASFASVRKFASEYNSLGLPLNLLINNAGIMATPFMLSQDNIELQFATNHLGHFLLTNLLLENMKKTAHESGKEGRIVNVSSEGHRHPYREGIRFDKINDNSSYQTLYAYGQSKLANILHANELTRRFQEEGIKITANSLHPGAIATNLLRHHKILEGYHRLLYF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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