Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G004281

染色体: Chr07 坐标: 55345649-55349102 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G004281
名称SmilChr07G004281
描述cell division control protein 2 homolog A
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向55345649 - 55349102 / -

ID 对照

NCBI Gene IDLOC130994920
GeneID130994920
locus_tag-
NCBI NameLOC130994920
原始查询LOC130994920

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述cell division control protein 2 homolog A
产物cell division control protein 2 homolog A
ArabidopsisAT3G48750 (CDC2)
cell division control 2 [Source:NCBI gene (formerly Entrezgene);Acc:824036]
identity=87.4; qcov=1; evalue=0; confidence=high
RiceOs02g0123100 (cdc2Os-2)
-
identity=85.9; qcov=0.986; evalue=0; confidence=high
GOGO:0000082 (G1/S transition of mitotic cell cycle); GO:0000307 (cyclin-dependent protein kinase holoenzyme complex); GO:0004693 (cyclin-dependent protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006468 (protein phosphorylation); GO:0007165 (signal transduction); GO:0010389 (regulation of G2/M transition of mitotic cell cycle); GO:0010468 (regulation of gene expression); GO:0030332 (cyclin binding); GO:0051445 (regulation of meiotic cell cycle)
KEGG-
PfamPF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro-
eggNOG-
NRGeneID:130994920

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057776042.1
2 Cytoplasm 细胞质 1.00000 XP_057776042.1
3 Cytosol 细胞质基质 0.80000 XP_057776042.1
4 Nucleoplasm 核质 0.40000 XP_057776042.1
5 Chromosome 染色体 0.00000 XP_057776042.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:55346047 G A EMS_canonical_SNV CDS_variant 3 B133,B137,B70
Chr7:55346865 C T EMS_canonical_SNV CDS_variant 2 B137,B70
Chr7:55347256 C T EMS_canonical_SNV CDS_variant 3 B117,C39,C77
Chr7:55347319 C T EMS_canonical_SNV CDS_variant 2 B127,B44
Chr7:55347765 T TA 1bp_insertion frameshift_variant 2 A10,B31
Chr7:55347765 T TA 1bp_insertion CDS_variant 2 A10,B31
Chr7:55347781 C T EMS_canonical_SNV CDS_variant 2 B50,C42
Chr7:55347871 C T EMS_canonical_SNV CDS_variant 2 B137,B70
Chr7:55348171 C T EMS_canonical_SNV CDS_variant 2 B137,B70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776042.1
294 aa
N
1
147
294
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 4-287 aa PF07714 PK_Tyr_Ser-Thr 6-199 aa
XP_057776043.1
294 aa
N
1
147
294
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 4-287 aa PF07714 PK_Tyr_Ser-Thr 6-199 aa
XP_057776044.1
294 aa
N
1
147
294
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 4-287 aa PF07714 PK_Tyr_Ser-Thr 6-199 aa
XP_057776045.1
294 aa
N
1
147
294
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 4-287 aa PF07714 PK_Tyr_Ser-Thr 6-199 aa
XP_057776046.1
294 aa
N
1
147
294
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 4-287 aa PF07714 PK_Tyr_Ser-Thr 6-199 aa
XP_057776048.1
294 aa
N
1
147
294
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 4-287 aa PF07714 PK_Tyr_Ser-Thr 6-199 aa
XP_057776049.1
294 aa
N
1
147
294
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 4-287 aa PF07714 PK_Tyr_Ser-Thr 6-199 aa
XP_057776050.1
294 aa
N
1
147
294
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 4-287 aa PF07714 PK_Tyr_Ser-Thr 6-199 aa
XP_057776051.1
294 aa
N
1
147
294
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 4-287 aa PF07714 PK_Tyr_Ser-Thr 6-199 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057776042.1 Pfam PF00069 Pkinase Domain 4 287 7.9e-78 262.2 Protein kinase domain
XP_057776042.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 6 199 6.3e-32 111.6 Protein tyrosine and serine/threonine kinase
XP_057776043.1 Pfam PF00069 Pkinase Domain 4 287 7.9e-78 262.2 Protein kinase domain
XP_057776043.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 6 199 6.3e-32 111.6 Protein tyrosine and serine/threonine kinase
XP_057776044.1 Pfam PF00069 Pkinase Domain 4 287 7.9e-78 262.2 Protein kinase domain
XP_057776044.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 6 199 6.3e-32 111.6 Protein tyrosine and serine/threonine kinase
XP_057776045.1 Pfam PF00069 Pkinase Domain 4 287 7.9e-78 262.2 Protein kinase domain
XP_057776045.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 6 199 6.3e-32 111.6 Protein tyrosine and serine/threonine kinase
XP_057776046.1 Pfam PF00069 Pkinase Domain 4 287 7.9e-78 262.2 Protein kinase domain
XP_057776046.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 6 199 6.3e-32 111.6 Protein tyrosine and serine/threonine kinase
XP_057776048.1 Pfam PF00069 Pkinase Domain 4 287 7.9e-78 262.2 Protein kinase domain
XP_057776048.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 6 199 6.3e-32 111.6 Protein tyrosine and serine/threonine kinase
XP_057776049.1 Pfam PF00069 Pkinase Domain 4 287 7.9e-78 262.2 Protein kinase domain
XP_057776049.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 6 199 6.3e-32 111.6 Protein tyrosine and serine/threonine kinase
XP_057776050.1 Pfam PF00069 Pkinase Domain 4 287 7.9e-78 262.2 Protein kinase domain
XP_057776050.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 6 199 6.3e-32 111.6 Protein tyrosine and serine/threonine kinase
XP_057776051.1 Pfam PF00069 Pkinase Domain 4 287 7.9e-78 262.2 Protein kinase domain
XP_057776051.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 6 199 6.3e-32 111.6 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA
XM_057920059.1
TCTCTCTCTCTCTCTCTCTCTCTCTCTCCACATTTTATCGATCTCTGCTGATCGCTGATATCGATTATTGTTGACTAGATGGACCAGTATGAAAAGGTCGAGAAGATTGGTGAGGGAACGTATGGCGTGGTGTACAAGGCCCGGGATCGTGTAACAAATGAGACTATTGCTTTAAAGAAAATCCGGCTAGAGCAGGAAGATGAGGGAGTGCCGAGTACAGCTATCAGAGAGATTTCTCTCTTGAAAGAGATGCAACATGG...
XM_057920060.1
TCTCTCTCTCTCTCTCTCTCTCTCTCTCCACATTTTATCGATCTCTGTTCTTCATTGTGTAGCTGATCGCTGATATCGATTATTGTTGACTAGATGGACCAGTATGAAAAGGTCGAGAAGATTGGTGAGGGAACGTATGGCGTGGTGTACAAGGCCCGGGATCGTGTAACAAATGAGACTATTGCTTTAAAGAAAATCCGGCTAGAGCAGGAAGATGAGGGAGTGCCGAGTACAGCTATCAGAGAGATTTCTCTCTTGAA...

CDS

9 records

下载 CDS FASTA
LOC130994920
ATGGACCAGTATGAAAAGGTCGAGAAGATTGGTGAGGGAACGTATGGCGTGGTGTACAAGGCCCGGGATCGTGTAACAAATGAGACTATTGCTTTAAAGAAAATCCGGCTAGAGCAGGAAGATGAGGGAGTGCCGAGTACAGCTATCAGAGAGATTTCTCTCTTGAAAGAGATGCAACATGGGAATATTGTAAGGTTGCAGGATGTGGTGCACAGTGATAAGCGACTGTACCTGGTATTTGAATATCTGGACTTGGACTT...
LOC130994920
ATGGACCAGTATGAAAAGGTCGAGAAGATTGGTGAGGGAACGTATGGCGTGGTGTACAAGGCCCGGGATCGTGTAACAAATGAGACTATTGCTTTAAAGAAAATCCGGCTAGAGCAGGAAGATGAGGGAGTGCCGAGTACAGCTATCAGAGAGATTTCTCTCTTGAAAGAGATGCAACATGGGAATATTGTAAGGTTGCAGGATGTGGTGCACAGTGATAAGCGACTGTACCTGGTATTTGAATATCTGGACTTGGACTT...

Protein

9 records

下载 Protein FASTA
XP_057776042.1
MDQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSDKRLYLVFEYLDLDLKKHMDSCPEFSKDPRLVKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRIMGTPSEDTWPGVTSLPDFKSAFPKWPPKDLSSMVPNLDAGG...
XP_057776043.1
MDQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSDKRLYLVFEYLDLDLKKHMDSCPEFSKDPRLVKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRIMGTPSEDTWPGVTSLPDFKSAFPKWPPKDLSSMVPNLDAGG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器