当前解析结果
SmilChr07G004414| 统一新 Gene ID | SmilChr07G004414 |
|---|---|
| 名称 | SmilChr07G004414 |
| 描述 | putative disease resistance protein At1g59780 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 56751278 - 56752616 / - |
| NCBI Gene ID | LOC130994930 |
|---|---|
| GeneID | 130994930 |
| locus_tag | - |
| NCBI Name | LOC130994930 |
| 原始查询 | LOC130994930 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein At1g59780 |
| 产物 | putative disease resistance protein At1g59780 |
| Arabidopsis | AT1G59780 (AT1G59780)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:842271] identity=25.7; qcov=0.931; evalue=2.34e-07; confidence=low |
| Rice | -- |
| GO | GO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994930 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057776085.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057776085.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057776085.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057776085.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057776085.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:56751875 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C48,C5 |
Chr7:56751876 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr7:56751896 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | B93,C48 |
Chr7:56751896 |
AG |
A |
1bp_deletion | CDS_variant | 2 | B93,C48 |
Chr7:56751954 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr7:56751971 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C2,C85 |
Chr7:56751976 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B103,B137 |
Chr7:56751992 |
AGT |
A |
2bp_deletion | frameshift_variant | 2 | B115,D4 |
Chr7:56751992 |
AGT |
A |
2bp_deletion | CDS_variant | 2 | B115,D4 |
Chr7:56752034 |
TTA |
T |
2bp_deletion | frameshift_variant | 27 | A23,B104,B112,B123,B139,B22,B32,B58,B73,B75,B88,B89,B93,B95,B99,C10,C14,C15,C20,C27,C30,C34,C41,C42,C49,C52,C73 |
Chr7:56752038 |
A |
ATG |
2bp_insertion | frameshift_variant | 26 | A23,B104,B112,B123,B139,B22,B32,B58,B73,B75,B88,B89,B93,B95,B99,C10,C14,C15,C20,C30,C34,C41,C42,C49,C52,C73 |
Chr7:56752071 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C83 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。