Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004342`

染色体: Chr07 坐标: 55963343-55966950 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004342`
名称	SmilChr07G004342
描述	calcineurin B-like protein 10
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	55963343 - 55966950 / `-`

ID 对照

NCBI Gene ID	`LOC130994932`
GeneID	`130994932`
locus_tag	`-`
NCBI Name	`LOC130994932`
原始查询	`LOC130994932`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calcineurin B-like protein 10
产物	calcineurin B-like protein 10
Arabidopsis	`AT4G33000` (CBL10) calcineurin B-like protein 10 [Source:NCBI gene (formerly Entrezgene);Acc:829437] identity=65.6; qcov=0.961; evalue=4.67e-112; confidence=high
Rice	`Os01g0711500` (OsCBL10) - identity=56.2; qcov=0.988; evalue=3.49e-99; confidence=high
GO	GO:0005509 (calcium ion binding); GO:0019722 (calcium-mediated signaling); GO:0019900 (kinase binding)
KEGG	-
Pfam	PF13202 (EF-hand_5); PF13499 (EF-hand_7)
InterPro	-
eggNOG	-
NR	GeneID:130994932

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.60000	`XP_057776090.1`
2	Vacuole membrane	液泡膜	0.60000	`XP_057776091.1`
3	Cell membrane	细胞膜	0.20000	`XP_057776090.1`
4	Cytoplasm	细胞质	0.20000	`XP_057776091.1`
5	Endoplasmic reticulum	内质网	0.20000	`XP_057776090.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:55963652`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B136,B75,C82
`Chr7:55963862`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr7:55964866`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr7:55966191`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:55966511`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B90
`Chr7:55966511`	`GA`	`G`	1bp_deletion	CDS_variant	1	B90
`Chr7:55966561`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A20,B129,B4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776090.1

256 aa

128

256

EF-hand_5

EF-hand_7

EF-hand_5

PF13202 EF-hand_5 119-138 aa PF13499 EF-hand_7 152-220 aa PF13202 EF-hand_5 199-223 aa

XP_057776091.1

254 aa

127

254

EF-hand_5

EF-hand_7

EF-hand_5

PF13202 EF-hand_5 117-136 aa PF13499 EF-hand_7 150-218 aa PF13202 EF-hand_5 197-221 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776090.1`	Pfam	`PF13202`	EF-hand_5	Domain	119	138	1.1e-11	44.4	EF hand
`XP_057776090.1`	Pfam	`PF13499`	EF-hand_7	Domain	152	220	6.5e-16	59.2	EF-hand domain pair
`XP_057776090.1`	Pfam	`PF13202`	EF-hand_5	Domain	199	223	1.1e-11	44.4	EF hand
`XP_057776091.1`	Pfam	`PF13202`	EF-hand_5	Domain	117	136	1.1e-11	44.4	EF hand
`XP_057776091.1`	Pfam	`PF13499`	EF-hand_7	Domain	150	218	1.7e-15	57.8	EF-hand domain pair
`XP_057776091.1`	Pfam	`PF13202`	EF-hand_5	Domain	197	221	1.1e-11	44.4	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920108.1
TTGTTGGGGAGGTAGGGAAGGTAAGCTTGGATATTCTTCATCTACAAATAATAATAATAATAAATTATATATCCATACATAAATGAAAGTGATAAGGCTTGACCGCTTGAGTGAAACATTAATGGATTTAACAAGAAAATAAACCACCTGCCAAAAAAGGGAAAATATACGAAATAATCAGCTGTGCATCGATGAGCATGGTCCTACCAGATTTTCTGAAATGGATTCGAGCAACAATTCGCTGCTGGAGTCTAGCTCTC...

XM_057920107.1
AAAGTGATAAGGCTTGACCGCTTGAGTGAAACATTAATGGATTTAACAAGAAAATAAACCACCTGCCAAAAAAGGGAAAATATACGAAATAATCAGCTGTGCATCGATGAGCATGGTCCTACCAGATTTTCTGAAATGGATTCGAGCAACAATTCGCTGCTGGAGTCTAGCTCTCTGACATTTGCGGAGAAGCTGTGCGCGGCGGTGTTCCCGATTGTAGCGTTAATCGACGCGTTGATCTTCGCGGTTTCCAGTTGTTT...

CDS

2 records

下载 CDS FASTA

LOC130994932
ATGGATTCGAGCAACAATTCGCTGCTGGAGTCTAGCTCTCTGACATTTGCGGAGAAGCTGTGCGCGGCGGTGTTCCCGATTGTAGCGTTAATCGACGCGTTGATCTTCGCGGTTTCCAGTTGTTTCGATTTCAAGTGCAGAAAATCGAGCAATACGAAGAAATTGAGCTACGACTACGAGGATATTGTTCGTCTCTCTCGGGGATCTCATTTTACTGTAAATGAAGTGGAGGCATTGCATGAGTTGTTTAAGAAGCTAAG...

LOC130994932
ATGGATTCGAGCAACAATTCGCTGCTGGAGTCTAGCTCTCTGACATTTGCGGAGAAGCTGTGCGCGGCGGTGTTCCCGATTGTAGCGTTAATCGACGCGTTGATCTTCGCGGTTTCCAGTTGTTTCGATTTCAAGTGCAGAAAATCGAGCAATACGAAGAAATTGAGCTACGACTACGAGGATATTGTTCGTCTCTCTCGGGGATCTCATTGTAATATTACTGTAAATGAAGTGGAGGCATTGCATGAGTTGTTTAAGAA...

Protein

2 records

下载 Protein FASTA

XP_057776090.1
MDSSNNSLLESSSLTFAEKLCAAVFPIVALIDALIFAVSSCFDFKCRKSSNTKKLSYDYEDIVRLSRGSHCNITVNEVEALHELFKKLSSSIIDDGLIHKEELKLALFTTASGENLILDRVFDLFDLKRNGVIDLEEFVCSLNVFHPNASLEEKIEFTFKLYDLGQTGFIEREEVKQLVIAILAESHMKLSDELLELIIDKTFEDADADKDGKINEEDWKTFVMQHPLLLRNMTLPHLKDVTTVFPSFVFNTEVED

XP_057776091.1
MDSSNNSLLESSSLTFAEKLCAAVFPIVALIDALIFAVSSCFDFKCRKSSNTKKLSYDYEDIVRLSRGSHFTVNEVEALHELFKKLSSSIIDDGLIHKEELKLALFTTASGENLILDRVFDLFDLKRNGVIDLEEFVCSLNVFHPNASLEEKIEFTFKLYDLGQTGFIEREEVKQLVIAILAESHMKLSDELLELIIDKTFEDADADKDGKINEEDWKTFVMQHPLLLRNMTLPHLKDVTTVFPSFVFNTEVED

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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