Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004251`

染色体: Chr07 坐标: 54951126-54954361 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004251`
名称	SmilChr07G004251
描述	uncharacterized SmilChr07G004251
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	54951126 - 54954361 / `-`

ID 对照

NCBI Gene ID	`LOC130994937`
GeneID	`130994937`
locus_tag	`-`
NCBI Name	`LOC130994937`
原始查询	`LOC130994937`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os04g0166600; species=rice; confidence=high
产物	hit=Os04g0166600; species=rice; confidence=high
Arabidopsis	`AT1G19330` (AT1G19330) histone deacetylase complex subunit [Source:NCBI gene (formerly Entrezgene);Acc:838515] identity=55.6; qcov=0.947; evalue=3.56e-71; confidence=high
Rice	`Os04g0166600` - identity=66.5; qcov=0.996; evalue=2.89e-98; confidence=high
GO	GO:0000118 (histone deacetylase complex); GO:0003712 (transcription coregulator activity); GO:0005515 (protein binding); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	PF13867 (SAP30_Sin3_bdg)
InterPro	-
eggNOG	-
NR	GeneID:130994937

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057776102.1`
2	Cytoplasm	细胞质	0.80000	`XP_057776102.1`
3	Nucleoplasm	核质	0.60000	`XP_057776102.1`
4	Cytosol	细胞质基质	0.20000	`XP_057776102.1`
5	Chromosome	染色体	0.00000	`XP_057776102.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:54951496`	`CTA`	`C`	2bp_deletion	frameshift_variant	79	A1,A10,A15,A16,A22,A24,B100,B109,B111,B114,B117,B118,B126,B13,B130,B132,B140,B15,B26,B27,B28,B3,B30,B34,B35,B4,B41,B44,B47,B59,B6,B62,B64,B66,B68,B7,B72,B73,B75,B8,B81,B84,B88,B89,B90,B92,B93,B94,B95,C10,C11,C13,C14,C15,C17,C18,C19,C2,C34,C44,C47,C51,C52,C58,C59,C6,C60,C67,C69,C7,C76,C77,C80,C82,C84,C86,C9,D11,D8
`Chr7:54951514`	`T`	`TG`	1bp_insertion	frameshift_variant	62	A1,A15,A25,A4,A5,B106,B110,B113,B114,B118,B125,B139,B140,B18,B19,B2,B24,B32,B36,B38,B39,B40,B45,B47,B48,B49,B5,B50,B52,B54,B56,B59,B60,B68,B71,B73,B77,B78,B82,B87,B9,B93,B96,B99,C12,C13,C22,C23,C26,C30,C33,C35,C40,C41,C46,C49,C50,C55,C58,C62,C65,C74
`Chr7:54951738`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	C17,C42,C49,C54,C60
`Chr7:54951751`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B112,B88,C43
`Chr7:54951961`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A9,C81
`Chr7:54952166`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776102.1

234 aa

117

234

SAP30_Sin3_bdg

PF13867 SAP30_Sin3_bdg 166-204 aa

XP_057776103.1

229 aa

114

229

SAP30_Sin3_bdg

PF13867 SAP30_Sin3_bdg 166-220 aa

XP_057776104.1

228 aa

114

228

SAP30_Sin3_bdg

PF13867 SAP30_Sin3_bdg 166-219 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776102.1`	Pfam	`PF13867`	SAP30_Sin3_bdg	Family	166	204	2.2e-13	51.0	Sin3 binding region of histone deacetylase complex subunit SAP30
`XP_057776103.1`	Pfam	`PF13867`	SAP30_Sin3_bdg	Family	166	220	5.9e-21	75.2	Sin3 binding region of histone deacetylase complex subunit SAP30
`XP_057776104.1`	Pfam	`PF13867`	SAP30_Sin3_bdg	Family	166	219	2.3e-21	76.5	Sin3 binding region of histone deacetylase complex subunit SAP30

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057920121.1
TGACCCAGTCAACCGGTCACAAAAGCTGAGGCACAACACCGGCAATGAGGCTGCGGGCCCACTGCAATTTGGCAGTAGCAGGTCACTCCCCAATTATCCGTTCCTAAATGGCAGTTAGTCTGCATTTAATTCATGCTTCTCCCTCTCTCTCTCACACTTCACTCTCCCACTCTCTCTCTACAATCCAATAAAACTCCCCCTCTGAAACTTCCATTCCGTGGCACATATCTCTCAGATCCCTGCCATTTTTCATATTCAAT...

XM_057920120.1
GCATTTAATTCATGCTTCTCCCTCTCTCTCTCACACTTCACTCTCCCACTCTCTCTCTACAATCCAATAAAACTCCCCCTCTGAAACTTCCATTCCGTGGCACATATCTCTCAGATCCCTGCCATTTTTCATATTCAATTGGATCACCTCCTGTCGATCACTTTCTCTCTCTAGGATCCTGCTCCTCGCGTCGCTGTCCGTACAGCATTTCTCTGGAGAGTTAAGGTTTTTTCATATCTACTGAAAGGGATAGATATTAC...

CDS

3 records

下载 CDS FASTA

LOC130994937
ATGCTGGAAACGGAGTCTTGTCCTTCACGGGTTTTATCACCATTCCGCGAGGAGAGTGGGGACGAGGAGCTCTCTGTTCTTCCGAGGCATACGAAGGTTATTGTGACTGGGAATAATAGAACAAAGAGTGTTCTGGTGGGGCTGCAAGGCGTTGTCAAGAAGGCAGTTGGCCTTGGTGGATGGCATTGGCTGGTTTTGAAGAATGGGGTTGAGGTCAAGCTCCAAAGGAATGCTTTGAGTGTGTTGGAACCTCCAACTGG...

Protein

3 records

下载 Protein FASTA

XP_057776102.1
MLETESCPSRVLSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLKNGVEVKLQRNALSVLEPPTGNEEDDDYDFDDSSSGSDIGGKDHHPFTSGFQFSKINKPRARYSRPWSPSPSMKSVNRSSCREVQFKCHTTQLRVNLSKLGTGSLWRYWRSFHLAHVSPNPTKEQLVNAIQQHFSSQVCIHIHTHTHTHTHKTKSIIIIVTKFEIFEK

XP_057776103.1
MLETESCPSRVLSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLKNGVEVKLQRNALSVLEPPTGNEEDDDYDFDDSSSGSDIGGKDHHPFTSGFQFSKINKPRARYSRPWSPSPSMKSVNRSSCREVQFKCHTTQLRVNLSKLGTGSLWRYWRSFHLAHVSPNPTKEQLVNAIQQHFSSQQHVDEVQVIVDFIRAAKRLQPVVGIN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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