当前解析结果
SmilChr07G004170| 统一新 Gene ID | SmilChr07G004170 |
|---|---|
| 名称 | SmilChr07G004170 |
| 描述 | puromycin-sensitive aminopeptidase-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 53617966 - 53627921 / - |
| NCBI Gene ID | LOC130994976 |
|---|---|
| GeneID | 130994976 |
| locus_tag | - |
| NCBI Name | LOC130994976 |
| 原始查询 | LOC130994976 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | puromycin-sensitive aminopeptidase-like |
| 产物 | puromycin-sensitive aminopeptidase-like |
| Arabidopsis | AT1G63770 (AT1G63770)Peptidase M1 family protein [Source:NCBI gene (formerly Entrezgene);Acc:842681] identity=78.3; qcov=0.983; evalue=0; confidence=high |
| Rice | Os08g0562700- identity=73; qcov=0.484; evalue=0; confidence=medium |
| GO | GO:0006508 (proteolysis); GO:0008237 (metallopeptidase activity); GO:0008270 (zinc ion binding); GO:0009507 (chloroplast) |
| KEGG | smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01433 (Peptidase_M1); PF11940 (DUF3458); PF17432 (DUF3458_C); PF17900 (Peptidase_M1_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994976 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057776177.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057776177.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057776177.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057776177.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057776177.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:53618419 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr7:53618583 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B118,B15,C30,C83 |
Chr7:53618758 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B118,B15,C30,C83 |
Chr7:53619919 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,A5,B102,B87,C50 |
Chr7:53621362 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:53621440 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:53621568 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,C8 |
Chr7:53621721 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,B125 |
Chr7:53621768 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B118,B134,B63,C70 |
Chr7:53621769 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr7:53621899 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr7:53622096 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B120,B135,B72 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776177.1PF17900
Peptidase_M1_N 80-245 aa
PF01433
Peptidase_M1 286-494 aa
PF11940
DUF3458 502-615 aa
PF17432
DUF3458_C 619-941 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776177.1 |
Pfam | PF17900 |
Peptidase_M1_N | Domain | 80 | 245 | 1.9e-14 | 54.9 | Peptidase M1 N-terminal domain |
XP_057776177.1 |
Pfam | PF01433 |
Peptidase_M1 | Domain | 286 | 494 | 6.2e-49 | 167.3 | Peptidase family M1 domain |
XP_057776177.1 |
Pfam | PF11940 |
DUF3458 | Domain | 502 | 615 | 1.8e-26 | 93.1 | Domain of unknown function (DUF3458) Ig-like fold |
XP_057776177.1 |
Pfam | PF17432 |
DUF3458_C | Repeat | 619 | 941 | 1.3e-119 | 400.1 | Domain of unknown function (DUF3458_C) ARM repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。