当前解析结果
SmilChr07G004474| 统一新 Gene ID | SmilChr07G004474 |
|---|---|
| 名称 | SmilChr07G004474 |
| 描述 | uncharacterized SmilChr07G004474 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 57291037 - 57297593 / + |
| NCBI Gene ID | LOC130995079 |
|---|---|
| GeneID | 130995079 |
| locus_tag | - |
| NCBI Name | LOC130995079 |
| 原始查询 | LOC130995079 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829445]; symbol=AT4G33080; hit=AT4G33080; species=arabidopsis; confidence=high |
| 产物 | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829445]; symbol=AT4G33080; hit=AT4G33080; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G33080 (AT4G33080)AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829445] identity=83.9; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0186700- identity=81.8; qcov=0.956; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00433 (Pkinase_C); PF03109 (ABC1); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995079 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057776212.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057776212.1 |
| 3 | Cytosol | 细胞质基质 | 1.00000 | XP_057776213.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057776212.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057776212.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:57291405 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | C29 |
Chr7:57291405 |
AG |
A |
1bp_deletion | CDS_variant | 1 | C29 |
Chr7:57291472 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B112,B44,D10,D11 |
Chr7:57292761 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:57292860 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B40,B63,B83,C2,C73 |
Chr7:57293913 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr7:57294239 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,C8 |
Chr7:57294251 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C7 |
Chr7:57294660 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A22,C39 |
Chr7:57294979 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,B112,B21,B80,C46 |
Chr7:57295805 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B12,B60,B86,C34,C59 |
Chr7:57295942 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B12,C16,C59 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776212.1PF00069
Pkinase 95-244 aa
PF07714
PK_Tyr_Ser-Thr 96-251 aa
PF03109
ABC1 168-246 aa
PF00069
Pkinase 292-401 aa
PF07714
PK_Tyr_Ser-Thr 305-376 aa
PF00433
Pkinase_C 420-465 aa
XP_057776213.1PF00069
Pkinase 95-244 aa
PF07714
PK_Tyr_Ser-Thr 96-251 aa
PF03109
ABC1 168-246 aa
PF00069
Pkinase 292-401 aa
PF07714
PK_Tyr_Ser-Thr 305-376 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776212.1 |
Pfam | PF00069 |
Pkinase | Domain | 95 | 244 | 4.4e-69 | 233.5 | Protein kinase domain |
XP_057776212.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 96 | 251 | 1.9e-30 | 106.7 | Protein tyrosine and serine/threonine kinase |
XP_057776212.1 |
Pfam | PF03109 |
ABC1 | Domain | 168 | 246 | 4.7e-07 | 29.9 | ABC1 atypical kinase-like domain |
XP_057776212.1 |
Pfam | PF00069 |
Pkinase | Domain | 292 | 401 | 4.4e-69 | 233.5 | Protein kinase domain |
XP_057776212.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 305 | 376 | 1.9e-30 | 106.7 | Protein tyrosine and serine/threonine kinase |
XP_057776212.1 |
Pfam | PF00433 |
Pkinase_C | Family | 420 | 465 | 3.1e-06 | 28.5 | Protein kinase C terminal domain |
XP_057776213.1 |
Pfam | PF00069 |
Pkinase | Domain | 95 | 244 | 1.2e-68 | 232.0 | Protein kinase domain |
XP_057776213.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 96 | 251 | 1.1e-30 | 107.6 | Protein tyrosine and serine/threonine kinase |
XP_057776213.1 |
Pfam | PF03109 |
ABC1 | Domain | 168 | 246 | 3.7e-07 | 30.3 | ABC1 atypical kinase-like domain |
XP_057776213.1 |
Pfam | PF00069 |
Pkinase | Domain | 292 | 401 | 1.2e-68 | 232.0 | Protein kinase domain |
XP_057776213.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 305 | 376 | 1.1e-30 | 107.6 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。