Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004491`

染色体: Chr07 坐标: 57499269-57503192 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004491`
名称	SmilChr07G004491
描述	putative late blight resistance protein homolog R1C-3
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	57499269 - 57503192 / `+`

ID 对照

NCBI Gene ID	`LOC130995095`
GeneID	`130995095`
locus_tag	`-`
NCBI Name	`LOC130995095`
原始查询	`LOC130995095`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1C-3
产物	putative late blight resistance protein homolog R1C-3
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.6; qcov=0.955; evalue=2.42e-68; confidence=low
Rice	`Os02g0272900` - identity=31.3; qcov=0.638; evalue=3.33e-67; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:130995095

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057776229.1`
2	Cytosol	细胞质基质	0.20000	`XP_057776229.1`
3	Nucleus	细胞核	0.00000	`XP_057776229.1`
4	Chromosome	染色体	0.00000	`XP_057776229.1`
5	Centromere	着丝粒	0.00000	`XP_057776229.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:57499878`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr7:57499887`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A1,C56
`Chr7:57499888`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr7:57499893`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B103,B129
`Chr7:57500558`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B103,B84,C78
`Chr7:57500591`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B29,B74,C74
`Chr7:57500592`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,A9,B16,B63
`Chr7:57500616`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B76,C40,D6
`Chr7:57500619`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B74,C74
`Chr7:57500632`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B101,B4,B6,C60,D9
`Chr7:57500645`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr7:57500675`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776229.1

892 aa

446

892

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 157-325 aa PF23559 WHD_DRP 410-480 aa PF23598 LRR_14 527-816 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776229.1`	Pfam	`PF00931`	NB-ARC	Domain	157	325	2.3e-34	119.1	NB-ARC domain
`XP_057776229.1`	Pfam	`PF23559`	WHD_DRP	Domain	410	480	1.1e-15	58.1	Disease resistance protein Winged helix domain
`XP_057776229.1`	Pfam	`PF23598`	LRR_14	Repeat	527	816	4.5e-14	52.7	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920246.1
ATATAACTAAAAATACAATGTGTCAATAGTAGGATTCATTCATATGACCAATTGCAAAACTAGTTTTGCATGGACATATTTCAATACAATAATTAAGTAAAACTATCGACATATTTCATCAAAAATTACATAAACATCACCATCAAATATCAAAAATAGCAAGCAAGAATCGCAAAATCTTGACTATTTCACGAACAAAGAAACATGTACATTATCTATTCAGACAACAACTAAGGGTAAAAATCAAAATTAATGCCAGC...

CDS

1 records

下载 CDS FASTA

LOC130995095
ATGAGGCGGATCGGCGGGCACCGCTGCTGGATCTCTCGACTGCTGCTGAAGGAGAAGAGAGCGGCGGAAACCCTAACAAAGACAGAGAGAGGAAAGGATTTTCTTGATGCTTATATTTCTCCAGTTGTCGATGACCATGAAGCGGATCCATTGGAGCGTCGCATTGCAGATGCAGTTTATGCAGCTGAGGATGTCATCGAATCCCAAATTGTGCTTCAAATTCATAACAGATCCAGAATTCGTGGGAAGATGTCCTGTTT...

Protein

1 records

下载 Protein FASTA

XP_057776229.1
MRRIGGHRCWISRLLLKEKRAAETLTKTERGKDFLDAYISPVVDDHEADPLERRIADAVYAAEDVIESQIVLQIHNRSRIRGKMSCFFKLFRARCKCATIVEDFYHDLQLVIEEMNLIKKEAMEIATAADQLQRKVSLTHAASSSTVKESIMVGFDEVLREVLDKLTGVHGSLQIIPIMGMGGIGKTTLARHLFEHAVVKKHFYIRAWTTISQTYDVRETLREVLFQASGDSGSDDLSERELRLKLYQYLWGRRYLIIMD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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