Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003676`

染色体: Chr01 坐标: 55180477-55184096 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003676`
名称	SmilChr01G003676
描述	U-box domain-containing protein 43
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	55180477 - 55184096 / `+`

ID 对照

NCBI Gene ID	`LOC130995097`
GeneID	`130995097`
locus_tag	`-`
NCBI Name	`LOC130995097`
原始查询	`LOC130995097`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	U-box domain-containing protein 43
产物	U-box domain-containing protein 43
Arabidopsis	`AT1G76390` (PUB43) ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843971] identity=62.1; qcov=1; evalue=0; confidence=high
Rice	`Os12g0277400` (OsPUB23) - identity=62.8; qcov=1; evalue=0; confidence=high
GO	GO:0004842 (ubiquitin-protein transferase activity); GO:0005515 (protein binding); GO:0016567 (protein ubiquitination)
KEGG	-
Pfam	PF04564 (U-box)
InterPro	-
eggNOG	-
NR	GeneID:130995097

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057776233.1`
2	Cell membrane	细胞膜	0.60000	`XP_057776233.1`
3	Cytoplasm	细胞质	0.20000	`XP_057776233.1`
4	Nucleus	细胞核	0.00000	`XP_057776233.1`
5	Chromosome	染色体	0.00000	`XP_057776233.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:55181417`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,B35,C35
`Chr1:55181536`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C56,C59
`Chr1:55181720`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B125,B69,B90,B92,D6
`Chr1:55181746`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr1:55182200`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B89,C87,D8
`Chr1:55182221`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C28,C31,C55
`Chr1:55182419`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr1:55182758`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B126,B63,B65,C43
`Chr1:55182761`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B89,C87,D8
`Chr1:55182851`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B125,B69,B90,B92,D6
`Chr1:55182911`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C5,C74
`Chr1:55182980`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B12

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776233.1

806 aa

403

806

U-box

PF04564 U-box 22-96 aa

XP_057776237.1

806 aa

403

806

U-box

PF04564 U-box 22-96 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776233.1`	Pfam	`PF04564`	U-box	Domain	22	96	1.8e-16	60.8	U-box domain
`XP_057776237.1`	Pfam	`PF04564`	U-box	Domain	22	96	1.8e-16	60.8	U-box domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920254.1
CATGAAAATTGAAAAAGAATGAGAAATGTGCATCCTCATTGCTTTAGCAAATTACAACCCCATTTTACGTTGCTGTTCAGCAACGACGGCTTCTTCAGTCAACTCTTCAACATTCAAACTTCTTTTGCTGAAGAAAAATTAAATTAATATTTTAGTATTCGTGCGACATTTTGCTGTCTTCTTCTTTCTTGTCCCTCCACCAACTGCTGCCATCTCTTTTGCCCTTTCTCTTCGCTTGTTTGGCGCATCTTTGGCCCTCG...

XM_057920250.1
AGCAAATTACAACCCCATTTTACGTTGCTGTTCAGCAACGACGGCTTCTTCAGTCAACTCTTCAACATTCAAACTTCTTTTGCTGAAGAAAAATTAAATTAATATTTTAGTATTCGTGCGACATTTTGCTGTCTTCTTCTTTCTTGTCCCTCCACCAACTGCTGCCATCTCTTTTGCCCTTTCTCTTCGCTTGTTTGGCGCATCTTTGGCCCTCGGCCCTTTTGATTTGTTTTTTACTTAGGAAATTTAATTTCTTTCTG...

CDS

2 records

下载 CDS FASTA

LOC130995097
ATGGCCGGAAGCTGGGATGGGAGCTCCGACCTTGGTGCTCAGTCGCGTGTGGAGCCAATCTACGACGCGTTCCTATGCCCTCTGACGAAGCAAGTGATGCGCGATCCTGTGAGCTTGGAAGACGGGCAGACATACGAGAGAGAAGCCATAGAGAAATGGCTGAGAGAGTGCAGGGAGAGTGGAAGAAGGCCAGTCTGCCCTCTGACATTGAGAGAGCTGAGAAGCACTGAACTAAGCCCTAGTATTGCTCTAAGACACAC...

Protein

2 records

下载 Protein FASTA

XP_057776233.1
MAGSWDGSSDLGAQSRVEPIYDAFLCPLTKQVMRDPVSLEDGQTYEREAIEKWLRECRESGRRPVCPLTLRELRSTELSPSIALRHTIKEWNARNEASKLDMARRSLSLSSSESDILQALRFVQRLCLHSPSNKRVVHDADLIPMVVDVLKSSSRQVRCTALETLRIVVEEDSDNKEIMAEGDTVRTIVKFLSHEQSKEREEAVSLLHELSNSERLCEKIGSVNGAVLILVGMANSNSESLLTVEMTDRTLENLARCENN...

XP_057776237.1
MAGSWDGSSDLGAQSRVEPIYDAFLCPLTKQVMRDPVSLEDGQTYEREAIEKWLRECRESGRRPVCPLTLRELRSTELSPSIALRHTIKEWNARNEASKLDMARRSLSLSSSESDILQALRFVQRLCLHSPSNKRVVHDADLIPMVVDVLKSSSRQVRCTALETLRIVVEEDSDNKEIMAEGDTVRTIVKFLSHEQSKEREEAVSLLHELSNSERLCEKIGSVNGAVLILVGMANSNSESLLTVEMTDRTLENLARCENN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器