Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004505`

染色体: Chr07 坐标: 57700151-57707122 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004505`
名称	SmilChr07G004505
描述	ankyrin repeat-containing protein At5g02620-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	57700151 - 57707122 / `+`

ID 对照

NCBI Gene ID	`LOC130995106`
GeneID	`130995106`
locus_tag	`-`
NCBI Name	`LOC130995106`
原始查询	`LOC130995106`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein At5g02620-like
产物	ankyrin repeat-containing protein At5g02620-like
Arabidopsis	`AT4G10720` (AT4G10720) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:826666] identity=25.3; qcov=0.833; evalue=8.05e-24; confidence=low
Rice	`Os11g0182900` - identity=25.5; qcov=1.02; evalue=2.34e-27; confidence=low
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:130995106

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776236.1`
2	Nucleus	细胞核	0.00000	`XP_057776236.1`
3	Chromosome	染色体	0.00000	`XP_057776236.1`
4	Centromere	着丝粒	0.00000	`XP_057776236.1`
5	Chromatin	染色质	0.00000	`XP_057776236.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:57700293`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B109,B59,B78
`Chr7:57700330`	`C`	`CAT`	2bp_insertion	frameshift_variant	2	A2,C31
`Chr7:57700330`	`C`	`CAT`	2bp_insertion	CDS_variant	2	A2,C31
`Chr7:57700333`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A2,C31
`Chr7:57700392`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr7:57700411`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	A1,B117,B3,B41,B65
`Chr7:57700411`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,B117,B3,B41,B65
`Chr7:57700434`	`C`	`T`	EMS_canonical_SNV	stop_gained	3	B71,C62,C74
`Chr7:57700434`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B71,C62,C74
`Chr7:57700439`	`AT`	`A`	1bp_deletion	frameshift_variant	18	B107,B137,B22,B23,B25,B37,B94,C31,C36,C37,C60,C69,C72,C75,C76,C84,C9,D2
`Chr7:57700442`	`A`	`AG`	1bp_insertion	frameshift_variant	18	B107,B137,B22,B23,B25,B37,B94,C31,C36,C37,C60,C69,C72,C75,C76,C84,C9,D2
`Chr7:57700449`	`CTG`	`C`	2bp_deletion	frameshift_variant	13	B10,B100,B115,B17,B51,B66,B88,C13,C32,C38,C49,C68,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776236.1

432 aa

216

432

Ank_2

Ank_4

Ank

Ank_3

PGG

PF12796 Ank_2 5-91 aa PF12796 Ank_2 102-160 aa PF13637 Ank_4 142-192 aa PF00023 Ank 171-193 aa PF13606 Ank_3 171-194 aa PF13962 PGG 243-350 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776236.1`	Pfam	`PF12796`	Ank_2	Repeat	5	91	1.2e-25	90.6	Ankyrin repeats (3 copies)
`XP_057776236.1`	Pfam	`PF12796`	Ank_2	Repeat	102	160	1.2e-25	90.6	Ankyrin repeats (3 copies)
`XP_057776236.1`	Pfam	`PF13637`	Ank_4	Repeat	142	192	1.1e-18	67.6	Ankyrin repeats (many copies)
`XP_057776236.1`	Pfam	`PF00023`	Ank	Repeat	171	193	6.6e-19	67.7	Ankyrin repeat
`XP_057776236.1`	Pfam	`PF13606`	Ank_3	Repeat	171	194	7.6e-19	66.3	Ankyrin repeat
`XP_057776236.1`	Pfam	`PF13962`	PGG	Domain	243	350	1.4e-20	74.0	Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920253.1
AAAAAAACCGAAAAAAGAAAAAATTAAGCAGAAAGCAGAGAAAGAAACAAAGGCATTAATAATTAGTGGGGAAGGAAGAATGGCTGCAGAACTCTACGATGCTGTATCAAAAGGGGATATAACAAAATTTCAAAAACTAGTTGCACAAGATCCATATCTCGTCGAAAGTGCTTCATTTGCATGTTCAAGAAATGTTCTTCACATAGCAACAATGCGGGGACAGACAGCCATGGTGGAAGAGGTGCTGAATATGAATCCGT...

CDS

1 records

下载 CDS FASTA

LOC130995106
ATGGCTGCAGAACTCTACGATGCTGTATCAAAAGGGGATATAACAAAATTTCAAAAACTAGTTGCACAAGATCCATATCTCGTCGAAAGTGCTTCATTTGCATGTTCAAGAAATGTTCTTCACATAGCAACAATGCGGGGACAGACAGCCATGGTGGAAGAGGTGCTGAATATGAATCCGTGGCTTTCTCGGAGTTTAGACTCCCAACAATCATCGCCTCTGCACATAGCAGCAGCACAAGGGCGCTTCGAGATCTCGAG...

Protein

1 records

下载 Protein FASTA

XP_057776236.1
MAAELYDAVSKGDITKFQKLVAQDPYLVESASFACSRNVLHIATMRGQTAMVEEVLNMNPWLSRSLDSQQSSPLHIAAAQGRFEISRKLLSVAPETRWWRDCRDMNPVHIAAVNGHVEILGHLLEESLLPAMERVGRGQTVLHLCVKHGQLTTLQFLVDKLWELVEAVDEDGETLLHLAVRSTQLEILKYLVESKKIRSKPNSMGITPLQILNRSPPGTAHYSEMGRIIDTWFAPVVHYREVLPKMNDAVMVVAVLIATM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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