当前解析结果
SmilChr07G004507| 统一新 Gene ID | SmilChr07G004507 |
|---|---|
| 名称 | SmilChr07G004507 |
| 描述 | ankyrin repeat-containing protein NPR4-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 57732962 - 57739477 / + |
| NCBI Gene ID | LOC130995107 |
|---|---|
| GeneID | 130995107 |
| locus_tag | - |
| NCBI Name | LOC130995107 |
| 原始查询 | LOC130995107 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein NPR4-like |
| 产物 | ankyrin repeat-containing protein NPR4-like |
| Arabidopsis | AT4G10720 (AT4G10720)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:826666] identity=23.6; qcov=1.06; evalue=1.02e-21; confidence=weak |
| Rice | Os11g0182900- identity=27.4; qcov=0.974; evalue=1.09e-26; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13962 (PGG) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995107 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057776238.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057776238.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057776238.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057776238.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057776238.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:57733687 |
C |
T |
EMS_canonical_SNV | stop_gained | 9 | B105,B108,B122,B43,B8,C10,C14,C30,D5 |
Chr7:57733723 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr7:57733724 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr7:57733795 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B129,B41,B6 |
Chr7:57733812 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B129,B6,B66 |
Chr7:57733842 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B6,B66 |
Chr7:57733842 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B6,B66 |
Chr7:57733855 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,B131 |
Chr7:57733865 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B134,C79 |
Chr7:57733867 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,B131 |
Chr7:57733918 |
GT |
G |
1bp_deletion | frameshift_variant | 4 | B121,B36,C80,C83 |
Chr7:57733918 |
GT |
G |
1bp_deletion | CDS_variant | 4 | B121,B36,C80,C83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776238.1PF12796
Ank_2 3-80 aa
PF00023
Ank 28-46 aa
PF12796
Ank_2 78-150 aa
PF13637
Ank_4 98-147 aa
PF12796
Ank_2 98-168 aa
PF00023
Ank 127-147 aa
PF13606
Ank_3 127-149 aa
PF13962
PGG 203-307 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776238.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 3 | 80 | 8.1e-25 | 87.9 | Ankyrin repeats (3 copies) |
XP_057776238.1 |
Pfam | PF00023 |
Ank | Repeat | 28 | 46 | 8.2e-17 | 61.1 | Ankyrin repeat |
XP_057776238.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 78 | 150 | 8.1e-25 | 87.9 | Ankyrin repeats (3 copies) |
XP_057776238.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 98 | 147 | 1.2e-17 | 64.3 | Ankyrin repeats (many copies) |
XP_057776238.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 98 | 168 | 8.1e-25 | 87.9 | Ankyrin repeats (3 copies) |
XP_057776238.1 |
Pfam | PF00023 |
Ank | Repeat | 127 | 147 | 8.2e-17 | 61.1 | Ankyrin repeat |
XP_057776238.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 127 | 149 | 2.1e-14 | 52.7 | Ankyrin repeat |
XP_057776238.1 |
Pfam | PF13962 |
PGG | Domain | 203 | 307 | 1.2e-19 | 70.9 | Domain of unknown function |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。