当前解析结果
SmilChr07G004510| 统一新 Gene ID | SmilChr07G004510 |
|---|---|
| 名称 | SmilChr07G004510 |
| 描述 | F-box protein At2g32560-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 57751022 - 57752389 / - |
| NCBI Gene ID | LOC130995108 |
|---|---|
| GeneID | 130995108 |
| locus_tag | - |
| NCBI Name | LOC130995108 |
| 原始查询 | LOC130995108 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box protein At2g32560-like |
| 产物 | F-box protein At2g32560-like |
| Arabidopsis | AT2G32560 (AT2G32560)F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:817817] identity=72.4; qcov=0.699; evalue=6.12e-26; confidence=medium |
| Rice | Os01g0281000 (OsFbox006)- identity=71.7; qcov=0.639; evalue=1.37e-23; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995108 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.60000 | XP_057776239.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057776239.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057776240.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057776239.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057776239.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:57751256 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B119,C54 |
Chr7:57751259 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr7:57751260 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B69,D2 |
Chr7:57751268 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A4,B106,B52 |
Chr7:57751607 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr7:57751617 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B83,C61,C65,D6 |
Chr7:57751618 |
TC |
T |
1bp_deletion | frameshift_variant | 6 | B136,B2,C35,C4,C54,C71 |
Chr7:57751621 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B105,B92 |
Chr7:57751761 |
C |
T |
EMS_canonical_SNV | stop_gained | 11 | B101,B104,B113,B22,B36,B4,C19,C34,C60,C61,D5 |
Chr7:57751786 |
G |
A |
EMS_canonical_SNV | stop_gained | 5 | B104,B12,B139,B34,B46 |
Chr7:57751786 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B12,B139,B34,B46 |
Chr7:57751854 |
G |
GTT |
2bp_insertion | stop_gained,frameshift_variant | 35 | A2,B10,B101,B105,B109,B112,B113,B118,B133,B134,B16,B21,B31,B38,B39,B42,B64,B71,B75,B78,B8,B83,B90,B92,C11,C21,C42,C45,C58,C59,C63,C69,C74,C79,C86 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。