当前解析结果
SmilChr07G004513| 统一新 Gene ID | SmilChr07G004513 |
|---|---|
| 名称 | SmilChr07G004513 |
| 描述 | ankyrin repeat-containing protein At2g01680-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 57777525 - 57780292 / + |
| NCBI Gene ID | LOC130995111 |
|---|---|
| GeneID | 130995111 |
| locus_tag | - |
| NCBI Name | LOC130995111 |
| 原始查询 | LOC130995111 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein At2g01680-like |
| 产物 | ankyrin repeat-containing protein At2g01680-like |
| Arabidopsis | AT2G01680 (AT2G01680)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:814697] identity=31.2; qcov=0.856; evalue=7.9e-20; confidence=low |
| Rice | Os11g0182900- identity=33.8; qcov=0.772; evalue=1.51e-17; confidence=low |
| GO | GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995111 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057776243.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057776242.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057776242.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057776242.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057776242.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:57777714 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B48,C18,D9 |
Chr7:57777776 |
AGT |
A |
2bp_deletion | frameshift_variant | 2 | B113,C56 |
Chr7:57777776 |
AGT |
A |
2bp_deletion | CDS_variant | 2 | B113,C56 |
Chr7:57777777 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B119,B129,C63 |
Chr7:57777850 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:57777901 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B94 |
Chr7:57777901 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B94 |
Chr7:57778059 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B74,C41,C64,D10 |
Chr7:57778062 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B119,B74,C41,C64,D10 |
Chr7:57778127 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr7:57778160 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B53,B56,C77 |
Chr7:57778194 |
G |
GAA |
2bp_insertion | frameshift_variant | 17 | A21,A25,B114,B115,B119,B120,B122,B140,B34,B42,B57,B6,B73,B8,B91,C13,C36 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776242.1PF12796
Ank_2 10-95 aa
PF00023
Ank 110-130 aa
PF13637
Ank_4 113-163 aa
PF12796
Ank_2 113-201 aa
PF00023
Ank 143-175 aa
PF13637
Ank_4 147-197 aa
PF00023
Ank 176-199 aa
PF13606
Ank_3 176-199 aa
XP_057776243.1PF12796
Ank_2 12-106 aa
PF00023
Ank 86-106 aa
PF13637
Ank_4 89-139 aa
PF12796
Ank_2 118-169 aa
PF00023
Ank 119-151 aa
PF13637
Ank_4 127-169 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776242.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 10 | 95 | 2.7e-28 | 99.1 | Ankyrin repeats (3 copies) |
XP_057776242.1 |
Pfam | PF00023 |
Ank | Repeat | 110 | 130 | 7.8e-24 | 83.1 | Ankyrin repeat |
XP_057776242.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 113 | 163 | 6.7e-22 | 77.8 | Ankyrin repeats (many copies) |
XP_057776242.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 113 | 201 | 2.7e-28 | 99.1 | Ankyrin repeats (3 copies) |
XP_057776242.1 |
Pfam | PF00023 |
Ank | Repeat | 143 | 175 | 7.8e-24 | 83.1 | Ankyrin repeat |
XP_057776242.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 147 | 197 | 6.7e-22 | 77.8 | Ankyrin repeats (many copies) |
XP_057776242.1 |
Pfam | PF00023 |
Ank | Repeat | 176 | 199 | 7.8e-24 | 83.1 | Ankyrin repeat |
XP_057776242.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 176 | 199 | 1.1e-20 | 72.0 | Ankyrin repeat |
XP_057776243.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 12 | 106 | 2.5e-20 | 73.6 | Ankyrin repeats (3 copies) |
XP_057776243.1 |
Pfam | PF00023 |
Ank | Repeat | 86 | 106 | 2.2e-19 | 69.2 | Ankyrin repeat |
XP_057776243.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 89 | 139 | 4.5e-18 | 65.6 | Ankyrin repeats (many copies) |
XP_057776243.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 118 | 169 | 2.5e-20 | 73.6 | Ankyrin repeats (3 copies) |
XP_057776243.1 |
Pfam | PF00023 |
Ank | Repeat | 119 | 151 | 2.2e-19 | 69.2 | Ankyrin repeat |
XP_057776243.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 127 | 169 | 4.5e-18 | 65.6 | Ankyrin repeats (many copies) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。