Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004529`

染色体: Chr07 坐标: 57952845-57955047 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004529`
名称	SmilChr07G004529
描述	ankyrin repeat-containing protein At5g02620-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	57952845 - 57955047 / `-`

ID 对照

NCBI Gene ID	`LOC130995123`
GeneID	`130995123`
locus_tag	`-`
NCBI Name	`LOC130995123`
原始查询	`LOC130995123`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein At5g02620-like
产物	ankyrin repeat-containing protein At5g02620-like
Arabidopsis	`AT5G02620` (ANK1) ankyrin-like1 [Source:NCBI gene (formerly Entrezgene);Acc:831855] identity=29.5; qcov=0.938; evalue=3e-19; confidence=low
Rice	`Os01g0837000` (OsNPR4) - identity=35.1; qcov=0.759; evalue=8.07e-17; confidence=low
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:130995123

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776256.1`
2	Cytosol	细胞质基质	0.80000	`XP_057776257.1`
3	Cytoplasm	细胞质	0.40000	`XP_057776257.1`
4	Nucleus	细胞核	0.00000	`XP_057776256.1`
5	Chromosome	染色体	0.00000	`XP_057776256.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:57953001`	`TG`	`T`	1bp_deletion	frameshift_variant	2	A3,B49
`Chr7:57953001`	`TG`	`T`	1bp_deletion	CDS_variant	2	A3,B49
`Chr7:57953021`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr7:57953030`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,B82
`Chr7:57953043`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,B128,B90,B92,D9
`Chr7:57953064`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,B61,C3
`Chr7:57953111`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A15,B63,B79,C24,C66
`Chr7:57953145`	`C`	`T`	EMS_canonical_SNV	stop_gained	28	A2,A6,B110,B113,B127,B133,B15,B16,B2,B21,B24,B31,B36,B47,B57,B58,B81,B94,C15,C27,C28,C37,C5,C58,C60,C63,D3,D7
`Chr7:57953147`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B62,C55,C57,C81
`Chr7:57953164`	`TTG`	`T`	2bp_deletion	frameshift_variant	2	A1,C3
`Chr7:57953164`	`TTG`	`T`	2bp_deletion	CDS_variant	2	A1,C3
`Chr7:57953169`	`C`	`CAA`	2bp_insertion	frameshift_variant	2	A1,C3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776256.1

411 aa

206

411

Ank_2

Ank

Ank_3

Ank_4

Ank_5

Ank_2

Ank

Ank_3

PGG

PF12796 Ank_2 10-95 aa PF12796 Ank_2 79-165 aa PF00023 Ank 108-131 aa PF13606 Ank_3 108-131 aa PF13637 Ank_4 147-197 aa PF13857 Ank_5 162-218 aa PF12796 Ank_2 171-223 aa PF00023 Ank 176-201 aa PF13606 Ank_3 176-204 aa PF13962 PGG 260-357 aa

XP_057776257.1

195 aa

195

Ank_2

Ank

Ank_3

Ank_2

Ank

Ank_4

PF12796 Ank_2 10-95 aa PF12796 Ank_2 79-165 aa PF00023 Ank 108-131 aa PF13606 Ank_3 108-131 aa PF12796 Ank_2 114-191 aa PF00023 Ank 144-165 aa PF13637 Ank_4 147-190 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776256.1`	Pfam	`PF12796`	Ank_2	Repeat	10	95	9.4e-29	100.5	Ankyrin repeats (3 copies)
`XP_057776256.1`	Pfam	`PF12796`	Ank_2	Repeat	79	165	9.4e-29	100.5	Ankyrin repeats (3 copies)
`XP_057776256.1`	Pfam	`PF00023`	Ank	Repeat	108	131	8.1e-21	73.7	Ankyrin repeat
`XP_057776256.1`	Pfam	`PF13606`	Ank_3	Repeat	108	131	2.1e-21	74.1	Ankyrin repeat
`XP_057776256.1`	Pfam	`PF13637`	Ank_4	Repeat	147	197	5.9e-19	68.4	Ankyrin repeats (many copies)
`XP_057776256.1`	Pfam	`PF13857`	Ank_5	Repeat	162	218	5.4e-17	62.4	Ankyrin repeats (many copies)
`XP_057776256.1`	Pfam	`PF12796`	Ank_2	Repeat	171	223	9.4e-29	100.5	Ankyrin repeats (3 copies)
`XP_057776256.1`	Pfam	`PF00023`	Ank	Repeat	176	201	8.1e-21	73.7	Ankyrin repeat
`XP_057776256.1`	Pfam	`PF13606`	Ank_3	Repeat	176	204	2.1e-21	74.1	Ankyrin repeat
`XP_057776256.1`	Pfam	`PF13962`	PGG	Domain	260	357	2.6e-19	69.8	Domain of unknown function
`XP_057776257.1`	Pfam	`PF12796`	Ank_2	Repeat	10	95	4.9e-33	114.3	Ankyrin repeats (3 copies)
`XP_057776257.1`	Pfam	`PF12796`	Ank_2	Repeat	79	165	4.9e-33	114.3	Ankyrin repeats (3 copies)
`XP_057776257.1`	Pfam	`PF00023`	Ank	Repeat	108	131	2.3e-18	66.0	Ankyrin repeat
`XP_057776257.1`	Pfam	`PF13606`	Ank_3	Repeat	108	131	1e-18	66.0	Ankyrin repeat
`XP_057776257.1`	Pfam	`PF12796`	Ank_2	Repeat	114	191	4.9e-33	114.3	Ankyrin repeats (3 copies)
`XP_057776257.1`	Pfam	`PF00023`	Ank	Repeat	144	165	2.3e-18	66.0	Ankyrin repeat
`XP_057776257.1`	Pfam	`PF13637`	Ank_4	Repeat	147	190	3.6e-16	59.6	Ankyrin repeats (many copies)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920274.1
GTTCATTATTAGTAGGGAAGTGAGTATGAAACTCACCTCAAGTGTCACAAGTAGGAAGTTACGCAGAAACTTCTCTTGTATTCATGATCACTTTAAAAAGATTGTCTTATATAAACATCTCCAGAATTCTTGACTGCCTCAACACCATCAAAACCATAATCAAGAAATTAATATTCACAATCAAGCAATGGTTCGAGAAGTAATTAGAAAAAAGCTTTACGATGCAGCAACACAAGGTGATGCAACAACGTTTCAACAAC...

XM_057920273.1
GTTCATTATTAGTAGGGAAGTGAGTATGAAACTCACCTCAAGTGTCACAAGTAGGAAGTTACGCAGAAACTTCTCTTGTATTCATGATCACTTTAAAAAGATTGTCTTATATAAACATCTCCAGAATTCTTGACTGCCTCAACACCATCAAAACCATAATCAAGAAATTAATATTCACAATCAAGCAATGGTTCGAGAAGTAATTAGAAAAAAGCTTTACGATGCAGCAACACAAGGTGATGCAACAACGTTTCAACAAC...

CDS

2 records

下载 CDS FASTA

LOC130995123
ATGGTTCGAGAAGTAATTAGAAAAAAGCTTTACGATGCAGCAACACAAGGTGATGCAACAACGTTTCAACAACTACTCCAAGAAGATCCATATCTTCTCGATGTAGTTTCATTTCCCGATTCAAGAAATCTTCTCCACATAGCAACAAGAAGCGGACAAGCATCCATTGTTGAAGAGATATTAAGGATCAACCAACATCTAGCCTGGAGTTTGGACTCCCAAAAATCGTCGTCTCTTCACATCGCAGCAGCAAAAGGGAC...

Protein

2 records

下载 Protein FASTA

XP_057776256.1
MVREVIRKKLYDAATQGDATTFQQLLQEDPYLLDVVSFPDSRNLLHIATRSGQASIVEEILRINQHLAWSLDSQKSSSLHIAAAKGTVEIASKLLAIAPQTCWLRDCHGMNPVHIAAMNGHVEILEEFIRHDRLPATEKVDHRQTVLHLCVKHGQLRVLQVLVNHFRELVHLQDDYGETVLHLAVRYKQVEIVRYLVENTGVEYQCSRNSNRETALDISLQSPQDTIQSEITKILENITTIKFSNTCLNKVPIEVVLGIL...

XP_057776257.1
MVREVIRKKLYDAATQGDATTFQQLLQEDPYLLDVVSFPDSRNLLHIATRSGQASIVEEILRINQHLAWSLDSQKSSSLHIAAAKGTVEIASKLLAIAPQTCWLRDCHGMNPVHIAAMNGHVEILEEFIRHDRLPATEKVDHRQTVLHLCVKHGQLRVLQVLVNHFRELVHLQDDYGETVLHLAVRYKQVEKTLE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器