当前解析结果
SmilChr07G004532| 统一新 Gene ID | SmilChr07G004532 |
|---|---|
| 名称 | SmilChr07G004532 |
| 描述 | ankyrin repeat-containing protein NPR4-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 57976176 - 57981546 / + |
| NCBI Gene ID | LOC130995127 |
|---|---|
| GeneID | 130995127 |
| locus_tag | - |
| NCBI Name | LOC130995127 |
| 原始查询 | LOC130995127 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein NPR4-like |
| 产物 | ankyrin repeat-containing protein NPR4-like |
| Arabidopsis | AT4G10720 (AT4G10720)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:826666] identity=26.4; qcov=0.958; evalue=6.8e-32; confidence=low |
| Rice | Os11g0182900- identity=27.7; qcov=0.833; evalue=5.11e-29; confidence=low |
| GO | GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13962 (PGG) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995127 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057776260.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057776260.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057776260.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057776260.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057776260.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:57976323 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B8,C30 |
Chr7:57976329 |
CA |
C |
1bp_deletion | frameshift_variant | 18 | B110,B114,B18,B23,B33,B43,B66,C13,C16,C19,C35,C44,C48,C5,C7,C80,D1,D8 |
Chr7:57976339 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B106,B121,B82,C21,C80 |
Chr7:57976341 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr7:57976461 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B118,B91,C85,D5 |
Chr7:57976463 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A6,C44 |
Chr7:57976464 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B103,C28,D4 |
Chr7:57976656 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr7:57976661 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr7:57976699 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B18,C57 |
Chr7:57976715 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A8,B32,B93 |
Chr7:57976749 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776260.1PF12796
Ank_2 10-95 aa
PF12796
Ank_2 109-174 aa
PF00023
Ank 110-130 aa
PF13637
Ank_4 113-163 aa
PF00023
Ank 143-175 aa
PF12796
Ank_2 171-217 aa
PF00023
Ank 176-198 aa
PF13606
Ank_3 176-199 aa
PF13962
PGG 250-356 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776260.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 10 | 95 | 8.8e-28 | 97.4 | Ankyrin repeats (3 copies) |
XP_057776260.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 109 | 174 | 8.8e-28 | 97.4 | Ankyrin repeats (3 copies) |
XP_057776260.1 |
Pfam | PF00023 |
Ank | Repeat | 110 | 130 | 1.2e-21 | 76.2 | Ankyrin repeat |
XP_057776260.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 113 | 163 | 2.5e-16 | 60.1 | Ankyrin repeats (many copies) |
XP_057776260.1 |
Pfam | PF00023 |
Ank | Repeat | 143 | 175 | 1.2e-21 | 76.2 | Ankyrin repeat |
XP_057776260.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 171 | 217 | 8.8e-28 | 97.4 | Ankyrin repeats (3 copies) |
XP_057776260.1 |
Pfam | PF00023 |
Ank | Repeat | 176 | 198 | 1.2e-21 | 76.2 | Ankyrin repeat |
XP_057776260.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 176 | 199 | 1.6e-19 | 68.4 | Ankyrin repeat |
XP_057776260.1 |
Pfam | PF13962 |
PGG | Domain | 250 | 356 | 5.6e-23 | 81.7 | Domain of unknown function |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。