当前解析结果
SmilChr07G004542| 统一新 Gene ID | SmilChr07G004542 |
|---|---|
| 名称 | SmilChr07G004542 |
| 描述 | ankyrin repeat-containing protein At5g02620-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 58105408 - 58111128 / + |
| NCBI Gene ID | LOC130995133 |
|---|---|
| GeneID | 130995133 |
| locus_tag | - |
| NCBI Name | LOC130995133 |
| 原始查询 | LOC130995133 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein At5g02620-like |
| 产物 | ankyrin repeat-containing protein At5g02620-like |
| Arabidopsis | AT5G54700 (AT5G54700)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:835559] identity=27.9; qcov=0.844; evalue=1.66e-16; confidence=low |
| Rice | Os11g0182900- identity=24.3; qcov=0.968; evalue=6e-14; confidence=weak |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13637 (Ank_4); PF13962 (PGG) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995133 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057776263.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057776263.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057776263.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057776263.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057776263.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:58106469 |
TA |
T |
1bp_deletion | frameshift_variant | 4 | B135,B51,C16,C75 |
Chr7:58106482 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B135,B51,C16,C75 |
Chr7:58106490 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B75,B94,C14,D2 |
Chr7:58106493 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B135,B51,C16,C68,C75 |
Chr7:58106563 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A3,B65 |
Chr7:58106609 |
T |
TTA |
2bp_insertion | frameshift_variant | 2 | C38,C61 |
Chr7:58106609 |
T |
TTA |
2bp_insertion | CDS_variant | 2 | C38,C61 |
Chr7:58106703 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr7:58110138 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B14,B76,B83,C59 |
Chr7:58110202 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B94,C14 |
Chr7:58110208 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B20,C19 |
Chr7:58110219 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B61,C3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776263.1PF00023
Ank 2-21 aa
PF12796
Ank_2 5-89 aa
PF00023
Ank 34-54 aa
PF13637
Ank_4 38-88 aa
PF13962
PGG 140-247 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776263.1 |
Pfam | PF00023 |
Ank | Repeat | 2 | 21 | 4.3e-13 | 49.4 | Ankyrin repeat |
XP_057776263.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 5 | 89 | 1.4e-14 | 55.1 | Ankyrin repeats (3 copies) |
XP_057776263.1 |
Pfam | PF00023 |
Ank | Repeat | 34 | 54 | 4.3e-13 | 49.4 | Ankyrin repeat |
XP_057776263.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 38 | 88 | 2.2e-12 | 47.6 | Ankyrin repeats (many copies) |
XP_057776263.1 |
Pfam | PF13962 |
PGG | Domain | 140 | 247 | 5.5e-20 | 72.0 | Domain of unknown function |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。