Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G004547

染色体: Chr07 坐标: 58187371-58189548 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G004547
名称SmilChr07G004547
描述ankyrin repeat-containing protein At5g02620-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向58187371 - 58189548 / -

ID 对照

NCBI Gene IDLOC130995137
GeneID130995137
locus_tag-
NCBI NameLOC130995137
原始查询LOC130995137

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ankyrin repeat-containing protein At5g02620-like
产物ankyrin repeat-containing protein At5g02620-like
ArabidopsisAT5G02620 (ANK1)
ankyrin-like1 [Source:NCBI gene (formerly Entrezgene);Acc:831855]
identity=29.5; qcov=0.938; evalue=3.12e-19; confidence=low
RiceOs01g0837000 (OsNPR4)
-
identity=35.8; qcov=0.759; evalue=4.33e-17; confidence=low
GOGO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG-
PfamPF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF13962 (PGG)
InterPro-
eggNOG-
NRGeneID:130995137

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057776269.1
2 Cytoplasm 细胞质 0.40000 XP_057776270.1
3 Cytosol 细胞质基质 0.40000 XP_057776270.1
4 Nucleus 细胞核 0.00000 XP_057776269.1
5 Chromosome 染色体 0.00000 XP_057776269.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:58187464 C T EMS_canonical_SNV CDS_variant 2 C32,C68
Chr7:58187489 C T EMS_canonical_SNV CDS_variant 2 B55,C26
Chr7:58187506 C T EMS_canonical_SNV CDS_variant 1 B26
Chr7:58187515 G A EMS_canonical_SNV CDS_variant 2 B55,C26
Chr7:58187528 GAT * 2bp_deletion CDS_variant 2 B55,C26
Chr7:58187537 AG A 1bp_deletion frameshift_variant 2 C39,C71
Chr7:58187537 AG A 1bp_deletion CDS_variant 2 C39,C71
Chr7:58187562 G A EMS_canonical_SNV CDS_variant 2 A19,C64
Chr7:58187616 TAA T 2bp_deletion frameshift_variant 1 C3
Chr7:58187616 TAA T 2bp_deletion CDS_variant 1 C3
Chr7:58187647 C T EMS_canonical_SNV CDS_variant 4 B105,B23,B38,B39
Chr7:58187648 C T EMS_canonical_SNV CDS_variant 2 B71,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776269.1
411 aa
N
1
206
411
Ank_2
Ank_2
Ank
Ank_3
Ank_2
Ank_4
Ank_5
Ank_2
Ank
Ank_3
PGG
C
PF12796 Ank_2 10-95 aa PF12796 Ank_2 79-165 aa PF00023 Ank 108-131 aa PF13606 Ank_3 108-131 aa PF12796 Ank_2 114-204 aa PF13637 Ank_4 147-197 aa PF13857 Ank_5 162-218 aa PF12796 Ank_2 171-219 aa PF00023 Ank 176-201 aa PF13606 Ank_3 176-204 aa PF13962 PGG 260-357 aa
XP_057776270.1
195 aa
N
1
98
195
Ank_2
Ank_2
Ank
Ank_3
Ank_2
Ank
Ank_4
C
PF12796 Ank_2 10-95 aa PF12796 Ank_2 79-165 aa PF00023 Ank 108-131 aa PF13606 Ank_3 108-131 aa PF12796 Ank_2 114-191 aa PF00023 Ank 144-165 aa PF13637 Ank_4 147-190 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057776269.1 Pfam PF12796 Ank_2 Repeat 10 95 6.1e-42 142.8 Ankyrin repeats (3 copies)
XP_057776269.1 Pfam PF12796 Ank_2 Repeat 79 165 6.1e-42 142.8 Ankyrin repeats (3 copies)
XP_057776269.1 Pfam PF00023 Ank Repeat 108 131 5.2e-20 71.1 Ankyrin repeat
XP_057776269.1 Pfam PF13606 Ank_3 Repeat 108 131 2.3e-21 74.0 Ankyrin repeat
XP_057776269.1 Pfam PF12796 Ank_2 Repeat 114 204 6.1e-42 142.8 Ankyrin repeats (3 copies)
XP_057776269.1 Pfam PF13637 Ank_4 Repeat 147 197 9.6e-18 64.6 Ankyrin repeats (many copies)
XP_057776269.1 Pfam PF13857 Ank_5 Repeat 162 218 1e-16 61.6 Ankyrin repeats (many copies)
XP_057776269.1 Pfam PF12796 Ank_2 Repeat 171 219 6.1e-42 142.8 Ankyrin repeats (3 copies)
XP_057776269.1 Pfam PF00023 Ank Repeat 176 201 5.2e-20 71.1 Ankyrin repeat
XP_057776269.1 Pfam PF13606 Ank_3 Repeat 176 204 2.3e-21 74.0 Ankyrin repeat
XP_057776269.1 Pfam PF13962 PGG Domain 260 357 1.7e-18 67.2 Domain of unknown function
XP_057776270.1 Pfam PF12796 Ank_2 Repeat 10 95 1.5e-32 112.7 Ankyrin repeats (3 copies)
XP_057776270.1 Pfam PF12796 Ank_2 Repeat 79 165 1.5e-32 112.7 Ankyrin repeats (3 copies)
XP_057776270.1 Pfam PF00023 Ank Repeat 108 131 1.4e-17 63.5 Ankyrin repeat
XP_057776270.1 Pfam PF13606 Ank_3 Repeat 108 131 1.3e-18 65.6 Ankyrin repeat
XP_057776270.1 Pfam PF12796 Ank_2 Repeat 114 191 1.5e-32 112.7 Ankyrin repeats (3 copies)
XP_057776270.1 Pfam PF00023 Ank Repeat 144 165 1.4e-17 63.5 Ankyrin repeat
XP_057776270.1 Pfam PF13637 Ank_4 Repeat 147 190 1.4e-15 57.7 Ankyrin repeats (many copies)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057920287.1
CTTTTACCTTTACATTATATGTTGAAGAATGAACACAATAGAATAAAATTTCTACAGAGACCGAAGTTTATTACCAGGAAAGTGAGTATGAAACTCACCTCAAGTCTCAGTACTTAAGTAGGAAATTATGCAGAAAATTCTCTTAATGACCACTTTAAAAAATTGTCTTTATATAAACATCGCCAGAATTCTTGACTGTCTCAACACCATCAACAACATAATCAAGAAATTAATATTCACAATCAAGCAATGGTTCGAGA...
XM_057920286.1
CTTTTACCTTTACATTATATGTTGAAGAATGAACACAATAGAATAAAATTTCTACAGAGACCGAAGTTTATTACCAGGAAAGTGAGTATGAAACTCACCTCAAGTCTCAGTACTTAAGTAGGAAATTATGCAGAAAATTCTCTTAATGACCACTTTAAAAAATTGTCTTTATATAAACATCGCCAGAATTCTTGACTGTCTCAACACCATCAACAACATAATCAAGAAATTAATATTCACAATCAAGCAATGGTTCGAGA...

CDS

2 records

下载 CDS FASTA
LOC130995137
ATGGTTCGAGAAGTAATTAGAAAAAAGCTTTACGATGCAGCAACACTAGGTGATGCAACAACGTTTCAACAACTACTCCAAGAAGATCCATATCTTCTCGATGTAGTTTCATTTCCCGATTCAAGAAATCTCCTCCACATAGCAACAAGAAGCGGACAAGCAGCCATTGTCGAGGAGATATTAAGGATCAACCAACATCTAGCCTGGAGTTTGGACTCCCAAAAGTCGTCGTCTCTTCACATCGCAGCAGCAAAAGGGAC...
LOC130995137
ATGGTTCGAGAAGTAATTAGAAAAAAGCTTTACGATGCAGCAACACTAGGTGATGCAACAACGTTTCAACAACTACTCCAAGAAGATCCATATCTTCTCGATGTAGTTTCATTTCCCGATTCAAGAAATCTCCTCCACATAGCAACAAGAAGCGGACAAGCAGCCATTGTCGAGGAGATATTAAGGATCAACCAACATCTAGCCTGGAGTTTGGACTCCCAAAAGTCGTCGTCTCTTCACATCGCAGCAGCAAAAGGGAC...

Protein

2 records

下载 Protein FASTA
XP_057776269.1
MVREVIRKKLYDAATLGDATTFQQLLQEDPYLLDVVSFPDSRNLLHIATRSGQAAIVEEILRINQHLAWSLDSQKSSSLHIAAAKGTVEIASKLLAIAPQTCWLRDCHGMNPVHIAAMNGHVEILEEFIRHDRLPATEKVDHRQTVLHLCVKHGQLRVLQVLVNHFRELVHLQDDYGETVLHLAVRYKQVEIVRYLVENTGVEYQCSRNSNRETALDISRQSPQDTIQSEITKILEQITIIKISNTSFNKVPIEVVLGIL...
XP_057776270.1
MVREVIRKKLYDAATLGDATTFQQLLQEDPYLLDVVSFPDSRNLLHIATRSGQAAIVEEILRINQHLAWSLDSQKSSSLHIAAAKGTVEIASKLLAIAPQTCWLRDCHGMNPVHIAAMNGHVEILEEFIRHDRLPATEKVDHRQTVLHLCVKHGQLRVLQVLVNHFRELVHLQDDYGETVLHLAVRYKQVEKTLE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器