Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004549`

染色体: Chr07 坐标: 58206387-58208598 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004549`
名称	SmilChr07G004549
描述	ankyrin repeat-containing protein At5g02620-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	58206387 - 58208598 / `-`

ID 对照

NCBI Gene ID	`LOC130995138`
GeneID	`130995138`
locus_tag	`-`
NCBI Name	`LOC130995138`
原始查询	`LOC130995138`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein At5g02620-like
产物	ankyrin repeat-containing protein At5g02620-like
Arabidopsis	`AT5G51160` (AT5G51160) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:835190] identity=25.4; qcov=0.852; evalue=1.34e-22; confidence=low
Rice	`Os03g0281100` (OsSTA96) - identity=28.4; qcov=0.513; evalue=4.39e-19; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:130995138

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776271.1`
2	Nucleus	细胞核	0.00000	`XP_057776271.1`
3	Chromosome	染色体	0.00000	`XP_057776271.1`
4	Centromere	着丝粒	0.00000	`XP_057776271.1`
5	Chromatin	染色质	0.00000	`XP_057776271.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:58206521`	`TG`	`T`	1bp_deletion	frameshift_variant	25	A18,A5,A8,B109,B113,B118,B135,B16,B21,B3,B53,B58,B59,B81,B83,B86,B87,B89,B93,C20,C49,C58,C59,C81,D10
`Chr7:58206558`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B13,B55,C1
`Chr7:58206563`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B90
`Chr7:58206584`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,C1
`Chr7:58206586`	`A`	`AAT`	2bp_insertion	frameshift_variant	7	B100,B114,B136,B45,C33,C68,D6
`Chr7:58206589`	`AAG`	`A`	2bp_deletion	frameshift_variant	6	B100,B114,B45,C33,C68,D6
`Chr7:58206623`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B31,B68,B91
`Chr7:58206652`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr7:58206666`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	B131,B48,B55,B77,C1
`Chr7:58206666`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B131,B48,B55,B77,C1
`Chr7:58206716`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B39
`Chr7:58206807`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B108

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776271.1

411 aa

206

411

Ank_2

Ank

Ank_3

Ank_4

Ank_5

Ank_2

Ank

Ank_3

PGG

PF12796 Ank_2 10-95 aa PF12796 Ank_2 79-165 aa PF00023 Ank 108-131 aa PF13606 Ank_3 108-131 aa PF13637 Ank_4 147-197 aa PF13857 Ank_5 162-218 aa PF12796 Ank_2 171-223 aa PF00023 Ank 176-201 aa PF13606 Ank_3 176-204 aa PF13962 PGG 260-355 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776271.1`	Pfam	`PF12796`	Ank_2	Repeat	10	95	4.6e-28	98.3	Ankyrin repeats (3 copies)
`XP_057776271.1`	Pfam	`PF12796`	Ank_2	Repeat	79	165	4.6e-28	98.3	Ankyrin repeats (3 copies)
`XP_057776271.1`	Pfam	`PF00023`	Ank	Repeat	108	131	4.4e-20	71.4	Ankyrin repeat
`XP_057776271.1`	Pfam	`PF13606`	Ank_3	Repeat	108	131	2.6e-21	73.9	Ankyrin repeat
`XP_057776271.1`	Pfam	`PF13637`	Ank_4	Repeat	147	197	2.1e-18	66.7	Ankyrin repeats (many copies)
`XP_057776271.1`	Pfam	`PF13857`	Ank_5	Repeat	162	218	3.2e-16	60.0	Ankyrin repeats (many copies)
`XP_057776271.1`	Pfam	`PF12796`	Ank_2	Repeat	171	223	4.6e-28	98.3	Ankyrin repeats (3 copies)
`XP_057776271.1`	Pfam	`PF00023`	Ank	Repeat	176	201	4.4e-20	71.4	Ankyrin repeat
`XP_057776271.1`	Pfam	`PF13606`	Ank_3	Repeat	176	204	2.6e-21	73.9	Ankyrin repeat
`XP_057776271.1`	Pfam	`PF13962`	PGG	Domain	260	355	7.7e-17	61.9	Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920288.1
AATGACCACTTTAAAAAATTGTCTTTATATAAACATCTCCAGAATTATTGACTGTCTCAACACCATCAACAACATAATCAAGAAATTAATATTCACAATCAGGCAATGGTTCGAGAAGTAATTAGAAAAAAGCTTTACGATGCAGCAACGCTAGGTGATGCAACAACGTTTCAAGAACTACTCCAAGAAGATCCATATCTTCTCGATGTAGTTTCATTTCCCGATTCAAGAAATCTCCTCCACATAGCAACAAGAAGCGG...

CDS

1 records

下载 CDS FASTA

LOC130995138
ATGGTTCGAGAAGTAATTAGAAAAAAGCTTTACGATGCAGCAACGCTAGGTGATGCAACAACGTTTCAAGAACTACTCCAAGAAGATCCATATCTTCTCGATGTAGTTTCATTTCCCGATTCAAGAAATCTCCTCCACATAGCAACAAGAAGCGGACAAGCAGCCATTGTCGAGGAGATATTAAGGATCAACCAACATCTAGCCTGGAGTTTGGACTCCCAAAAGTCGTCGTCTCTTCACATCGCAGCAGCAAAAGGGAC...

Protein

1 records

下载 Protein FASTA

XP_057776271.1
MVREVIRKKLYDAATLGDATTFQELLQEDPYLLDVVSFPDSRNLLHIATRSGQAAIVEEILRINQHLAWSLDSQKSSSLHIAAAKGTVEIASKLLAIAPQTCWLRDCHGMNPVHIAAMNGHVEILEEFIRHDRLPATEKVDHRQTVLHLCVKHGQLRVLQVLVNHFRELVHLQDDYGETVLHLAVRYKQVEIVRYLVENTGVEYQCSRNSNRETALDISLQSPQDTIQSEITKILEHITTIKFSNSSFNKVPIEVVLGIL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器