Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003681`

染色体: Chr01 坐标: 55214937-55217804 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003681`
名称	SmilChr01G003681
描述	glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	55214937 - 55217804 / `+`

ID 对照

NCBI Gene ID	`LOC130995145`
GeneID	`130995145`
locus_tag	`-`
NCBI Name	`LOC130995145`
原始查询	`LOC130995145`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like
产物	glyceraldehyde-3-phosphate dehydrogenase B%2C chloroplastic-like
Arabidopsis	`AT1G42970` (GAPB) glyceraldehyde-3-phosphate dehydrogenase B subunit [Source:NCBI gene (formerly Entrezgene);Acc:840895] identity=85.4; qcov=1; evalue=0; confidence=high
Rice	`Os03g0129300` (GADPH) - identity=79.6; qcov=1; evalue=0; confidence=high
GO	GO:0004365 (glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity); GO:0006006 (glucose metabolic process); GO:0009507 (chloroplast); GO:0050661 (NADP binding); GO:0051287 (NAD binding)
KEGG	smil00710 (Carbon fixation by Calvin cycle - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00044 (Gp_dh_N); PF02800 (Gp_dh_C)
InterPro	-
eggNOG	-
NR	GeneID:130995145

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057776279.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057776279.1`
3	Nucleus	细胞核	0.00000	`XP_057776279.1`
4	Chromosome	染色体	0.00000	`XP_057776279.1`
5	Centromere	着丝粒	0.00000	`XP_057776279.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:55216162`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B103,B105,B59,B75,C30
`Chr1:55216484`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B102,B69
`Chr1:55216495`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr1:55216990`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B103,B105,B29,B59,B75
`Chr1:55217083`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr1:55217205`	`AGG`	`A`	2bp_deletion	frameshift_variant	32	A21,A3,A4,B104,B105,B106,B113,B124,B125,B14,B22,B23,B27,B4,B56,B70,B71,B73,B94,B96,C17,C39,C49,C5,C52,C58,C65,C73,C79,D11,D4,D7
`Chr1:55217220`	`G`	`GAT`	2bp_insertion	frameshift_variant	30	A21,A3,A4,B104,B105,B106,B113,B124,B125,B14,B22,B23,B27,B4,B56,B70,B71,B73,B94,B96,C17,C39,C49,C5,C52,C58,C79,D11,D4,D7
`Chr1:55217224`	`G`	`GT`	1bp_insertion	frameshift_variant	28	A21,A3,A4,B104,B105,B106,B113,B124,B125,B14,B22,B23,B27,B4,B56,B70,B71,B73,B96,C17,C39,C49,C5,C58,C79,D11,D4,D7
`Chr1:55217364`	`A`	`ACT`	2bp_insertion	frameshift_variant	3	B119,B79,C62
`Chr1:55217364`	`A`	`ACT`	2bp_insertion	CDS_variant	3	B119,B79,C62
`Chr1:55217481`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C56,C59
`Chr1:55217506`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776279.1

451 aa

226

451

Gp_dh_N

Gp_dh_C

PF00044 Gp_dh_N 87-188 aa PF02800 Gp_dh_C 238-403 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776279.1`	Pfam	`PF00044`	Gp_dh_N	Domain	87	188	4.2e-32	111.1	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
`XP_057776279.1`	Pfam	`PF02800`	Gp_dh_C	Domain	238	403	1.8e-71	240.0	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920296.1
ATACTTCATCACAAGCACAAGAAATTTAGAACTATTAATTATCTGATTGGTTAGTCTTTCAGGAAACCGTGGGAAAATTTAGTTCAAAATAATTGAATATTTCAAAAGGGCCATCAAGAAATGAAAACCACAATGGGAGAAAAAAATATCTGTGGCTCACATGCATTTTGATGGTGCAAGAAAATGCATCATCTTATCCAATATCAATCTCCACATTCCATCCTCACCACTCAATATCTTGACTCATTTGTTTCAGTTCT...

CDS

1 records

下载 CDS FASTA

LOC130995145
ATGGCGTCCCATGCAGCTTTGGCCTCTTCAAGAATCCCAGCCTGCACAAAGCTCCCTTCCAAGACCTCTCATTCTTTCCCTGCTCAATGCTTCTCAAAGAGAGTTGAAGTAGCAGAATTCTCTGGCCTCAAATCCAGTGGTTGTGTGACTTTTGCCAAGAATGGTAGGGAAGCTTCCTTTTTTGATGCAGTGGCTGCCCAACTCACCCCAAAGACTGCAGGATCAGCTCCTGCTAAGGGAGAGACTGTGGCCAAACTGAA...

Protein

1 records

下载 Protein FASTA

XP_057776279.1
MASHAALASSRIPACTKLPSKTSHSFPAQCFSKRVEVAEFSGLKSSGCVTFAKNGREASFFDAVAAQLTPKTAGSAPAKGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVVNDSGGVKNASHLLKYDSMLGTFKADVKTVDNETISVDGKLIKVVSNRDPLKLPWAELGVDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEHDYDHDVADIISNASCTTNCLAPFVKILDEEFGIVKG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器