当前解析结果
SmilChr07G004573| 统一新 Gene ID | SmilChr07G004573 |
|---|---|
| 名称 | SmilChr07G004573 |
| 描述 | ankyrin repeat-containing protein At5g02620-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 58518127 - 58521008 / + |
| NCBI Gene ID | LOC130995158 |
|---|---|
| GeneID | 130995158 |
| locus_tag | - |
| NCBI Name | LOC130995158 |
| 原始查询 | LOC130995158 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein At5g02620-like |
| 产物 | ankyrin repeat-containing protein At5g02620-like |
| Arabidopsis | AT4G10720 (AT4G10720)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:826666] identity=25.5; qcov=1.07; evalue=7.59e-32; confidence=low |
| Rice | Os11g0182900- identity=26; qcov=0.882; evalue=8.55e-29; confidence=low |
| GO | GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF13962 (PGG) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995158 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057776290.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057776290.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057776290.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057776290.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057776290.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:58518193 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A14,A6,B47,D7 |
Chr7:58518214 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A14,A6,B127,C28 |
Chr7:58518253 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B118,D10,D11 |
Chr7:58518276 |
TG |
T |
1bp_deletion | frameshift_variant | 12 | A7,B125,B47,B62,B64,B74,B77,B96,C4,C63,C64,C74 |
Chr7:58518280 |
C |
CG |
1bp_insertion | frameshift_variant | 11 | A7,B125,B47,B62,B64,B74,B77,C4,C63,C64,C74 |
Chr7:58518291 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | B91 |
Chr7:58518291 |
AT |
A |
1bp_deletion | CDS_variant | 1 | B91 |
Chr7:58518310 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr7:58518329 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B117,B12,B131,B55,C23 |
Chr7:58518374 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B115,D4 |
Chr7:58518386 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr7:58518438 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776290.1PF12796
Ank_2 10-96 aa
PF00023
Ank 77-95 aa
PF12796
Ank_2 109-169 aa
PF13637
Ank_4 147-197 aa
PF13857
Ank_5 173-217 aa
PF00023
Ank 176-198 aa
PF13606
Ank_3 176-198 aa
PF13962
PGG 250-357 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776290.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 10 | 96 | 1.1e-27 | 97.1 | Ankyrin repeats (3 copies) |
XP_057776290.1 |
Pfam | PF00023 |
Ank | Repeat | 77 | 95 | 2.4e-21 | 75.3 | Ankyrin repeat |
XP_057776290.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 109 | 169 | 1.1e-27 | 97.1 | Ankyrin repeats (3 copies) |
XP_057776290.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 147 | 197 | 1.1e-19 | 70.7 | Ankyrin repeats (many copies) |
XP_057776290.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 173 | 217 | 7.2e-21 | 74.8 | Ankyrin repeats (many copies) |
XP_057776290.1 |
Pfam | PF00023 |
Ank | Repeat | 176 | 198 | 2.4e-21 | 75.3 | Ankyrin repeat |
XP_057776290.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 176 | 198 | 2.4e-20 | 70.9 | Ankyrin repeat |
XP_057776290.1 |
Pfam | PF13962 |
PGG | Domain | 250 | 357 | 6.1e-24 | 84.8 | Domain of unknown function |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。