当前解析结果
SmilChr07G004576| 统一新 Gene ID | SmilChr07G004576 |
|---|---|
| 名称 | SmilChr07G004576 |
| 描述 | ankyrin repeat-containing protein BDA1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 58542172 - 58545148 / + |
| NCBI Gene ID | LOC130995159 |
|---|---|
| GeneID | 130995159 |
| locus_tag | - |
| NCBI Name | LOC130995159 |
| 原始查询 | LOC130995159 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein BDA1-like |
| 产物 | ankyrin repeat-containing protein BDA1-like |
| Arabidopsis | AT5G02620 (ANK1)ankyrin-like1 [Source:NCBI gene (formerly Entrezgene);Acc:831855] identity=31; qcov=0.75; evalue=7.93e-20; confidence=low |
| Rice | Os11g0182900- identity=26.1; qcov=1.01; evalue=7.22e-20; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995159 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057776291.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057776291.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057776291.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057776291.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057776291.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:58542302 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr7:58542395 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr7:58542411 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr7:58542456 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A14,B12,B128,B39 |
Chr7:58542529 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B34,C62 |
Chr7:58542530 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B28,D7 |
Chr7:58542564 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B16,C62,C77 |
Chr7:58542594 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr7:58542612 |
GC |
G |
1bp_deletion | frameshift_variant | 11 | B127,B128,B30,B47,B48,C13,C18,C28,C43,D7,D9 |
Chr7:58542616 |
GTT |
G |
2bp_deletion | frameshift_variant | 31 | A11,A14,A15,A19,A22,A3,A5,B113,B19,B30,B33,B45,B58,B84,B94,C11,C14,C20,C25,C28,C30,C38,C39,C43,C46,C51,C70,C72,C77,C78,C9 |
Chr7:58542620 |
G |
GGC |
2bp_insertion | frameshift_variant | 33 | A11,A14,A15,A19,A22,A3,A5,B113,B19,B30,B33,B45,B58,B83,B84,B94,C11,C14,C20,C25,C28,C30,C35,C38,C39,C43,C46,C51,C70,C72,C77,C78,C9 |
Chr7:58542631 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B51,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776291.1PF00023
Ank 15-33 aa
PF12796
Ank_2 17-108 aa
PF13637
Ank_4 85-135 aa
PF12796
Ank_2 111-154 aa
PF13857
Ank_5 111-155 aa
PF00023
Ank 114-136 aa
PF13606
Ank_3 114-136 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776291.1 |
Pfam | PF00023 |
Ank | Repeat | 15 | 33 | 3.4e-20 | 71.7 | Ankyrin repeat |
XP_057776291.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 17 | 108 | 1.3e-21 | 77.7 | Ankyrin repeats (3 copies) |
XP_057776291.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 85 | 135 | 1.1e-18 | 67.5 | Ankyrin repeats (many copies) |
XP_057776291.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 111 | 154 | 1.3e-21 | 77.7 | Ankyrin repeats (3 copies) |
XP_057776291.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 111 | 155 | 3.3e-21 | 75.9 | Ankyrin repeats (many copies) |
XP_057776291.1 |
Pfam | PF00023 |
Ank | Repeat | 114 | 136 | 3.4e-20 | 71.7 | Ankyrin repeat |
XP_057776291.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 114 | 136 | 1.4e-18 | 65.5 | Ankyrin repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。