Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004581`

染色体: Chr07 坐标: 58626283-58628167 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004581`
名称	SmilChr07G004581
描述	ankyrin repeat-containing protein At2g01680-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	58626283 - 58628167 / `-`

ID 对照

NCBI Gene ID	`LOC130995162`
GeneID	`130995162`
locus_tag	`-`
NCBI Name	`LOC130995162`
原始查询	`LOC130995162`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein At2g01680-like
产物	ankyrin repeat-containing protein At2g01680-like
Arabidopsis	`AT4G10720` (AT4G10720) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:826666] identity=24.7; qcov=1.06; evalue=7.94e-31; confidence=weak
Rice	`Os11g0182900` - identity=26.1; qcov=0.948; evalue=1.47e-29; confidence=low
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:130995162

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776295.1`
2	Nucleus	细胞核	0.00000	`XP_057776295.1`
3	Chromosome	染色体	0.00000	`XP_057776295.1`
4	Centromere	着丝粒	0.00000	`XP_057776295.1`
5	Chromatin	染色质	0.00000	`XP_057776295.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:58626383`	`C`	`CAT`	2bp_insertion	frameshift_variant	63	A10,A11,A18,A2,A20,A21,A22,A23,A24,B1,B101,B106,B108,B11,B112,B121,B127,B13,B131,B133,B135,B139,B2,B23,B33,B34,B42,B43,B44,B46,B47,B58,B62,B7,B78,B80,B86,B89,B91,B95,B98,B99,C1,C14,C16,C27,C3,C40,C42,C46,C48,C54,C55,C58,C59,C71,C77,C8,C87,D1,D11,D6,D9
`Chr7:58626396`	`AC`	`A`	1bp_deletion	frameshift_variant	25	A14,A8,B109,B118,B126,B133,B135,B140,B2,B20,B35,B38,B39,B57,B66,B67,B72,B84,C13,C17,C19,C31,C48,C53,C57
`Chr7:58626438`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr7:58626441`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr7:58626475`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr7:58626484`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:58626650`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr7:58626829`	`GT`	`G`	1bp_deletion	frameshift_variant	12	A8,B118,B32,B36,B53,B90,B92,B93,C17,C60,C77,C85
`Chr7:58626838`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B44,B67,C51,C79
`Chr7:58626840`	`CG`	`C`	1bp_deletion	frameshift_variant	22	A14,A19,A25,B117,B128,B130,B4,B64,B65,B75,B81,C18,C36,C46,C47,C5,C51,C52,C7,C76,C84,C86
`Chr7:58626899`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr7:58626927`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776295.1

425 aa

212

425

Ank_2

Ank

Ank_4

Ank

Ank_3

PGG

PF12796 Ank_2 10-96 aa PF12796 Ank_2 106-169 aa PF00023 Ank 109-130 aa PF00023 Ank 143-174 aa PF13637 Ank_4 147-197 aa PF00023 Ank 176-199 aa PF13606 Ank_3 176-200 aa PF13962 PGG 249-346 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776295.1`	Pfam	`PF12796`	Ank_2	Repeat	10	96	6.8e-29	101.0	Ankyrin repeats (3 copies)
`XP_057776295.1`	Pfam	`PF12796`	Ank_2	Repeat	106	169	6.8e-29	101.0	Ankyrin repeats (3 copies)
`XP_057776295.1`	Pfam	`PF00023`	Ank	Repeat	109	130	3.3e-22	78.0	Ankyrin repeat
`XP_057776295.1`	Pfam	`PF00023`	Ank	Repeat	143	174	3.3e-22	78.0	Ankyrin repeat
`XP_057776295.1`	Pfam	`PF13637`	Ank_4	Repeat	147	197	8.5e-23	80.6	Ankyrin repeats (many copies)
`XP_057776295.1`	Pfam	`PF00023`	Ank	Repeat	176	199	3.3e-22	78.0	Ankyrin repeat
`XP_057776295.1`	Pfam	`PF13606`	Ank_3	Repeat	176	200	8.1e-23	78.5	Ankyrin repeat
`XP_057776295.1`	Pfam	`PF13962`	PGG	Domain	249	346	3.6e-18	66.2	Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920312.1
AGAGTGGTGTATTATATATACATACATCATTTGTGTAATTTATATGAAAAAACTAGAGAAAGAAAAACGAAGGCATCGATATATTAGCTAGTGGGGAAGAATGATGAAAGAAGTAGTTGAAAAGATACTCTACAATGCTGCATCAAAAGGGGATGTAACAACACTTAAACAACTTGTTCAAGAAGATCCATATCTTGTTCATGAAGCCCCATTTGCATGTTCAAGAAATCTTCTACACGTAGCAGCAATGCACGGACAAT...

CDS

1 records

下载 CDS FASTA

LOC130995162
ATGATGAAAGAAGTAGTTGAAAAGATACTCTACAATGCTGCATCAAAAGGGGATGTAACAACACTTAAACAACTTGTTCAAGAAGATCCATATCTTGTTCATGAAGCCCCATTTGCATGTTCAAGAAATCTTCTACACGTAGCAGCAATGCACGGACAATCAGCCATCGTTGAAGAGGTGTTAAGGATGAATCCACGTCTAGCTCGGATTCCAGACTCCCAGAAATCATCGCCTCTCCACATCGCAACAGCTGAAGGGCA...

Protein

1 records

下载 Protein FASTA

XP_057776295.1
MMKEVVEKILYNAASKGDVTTLKQLVQEDPYLVHEAPFACSRNLLHVAAMHGQSAIVEEVLRMNPRLARIPDSQKSSPLHIATAEGHVIIASKLLSVAPEMCWWRDDQGMNPVHVAAMNGHVEIVEHLVHESCLPAMERLHRGQTVLHLCVKHGQFRALKVLVENLGELVCAKDDDGETLLHLAVRCNQVETIQYLVDNKTVERQTRNSMGKTALQVLNESPPHTATYTKIKRILKNLSNESYFHVIPKMTDVTMVVVVL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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