当前解析结果
SmilChr07G004584| 统一新 Gene ID | SmilChr07G004584 |
|---|---|
| 名称 | SmilChr07G004584 |
| 描述 | ankyrin repeat-containing protein At5g02620-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 58652843 - 58656049 / + |
| NCBI Gene ID | LOC130995164 |
|---|---|
| GeneID | 130995164 |
| locus_tag | - |
| NCBI Name | LOC130995164 |
| 原始查询 | LOC130995164 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein At5g02620-like |
| 产物 | ankyrin repeat-containing protein At5g02620-like |
| Arabidopsis | AT5G51160 (AT5G51160)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:835190] identity=25.8; qcov=1.06; evalue=1.06e-25; confidence=low |
| Rice | Os11g0182900- identity=26.4; qcov=0.919; evalue=1.23e-22; confidence=low |
| GO | GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF13962 (PGG) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995164 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057776297.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057776297.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057776297.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057776297.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057776297.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:58654755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B93,D11 |
Chr7:58654762 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr7:58654784 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A21,B83,C59 |
Chr7:58654786 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr7:58654809 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B127,B26,B60,C40,D10 |
Chr7:58654811 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,C85 |
Chr7:58654839 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B47,C28 |
Chr7:58654846 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr7:58654914 |
TCG |
T |
2bp_deletion | frameshift_variant | 1 | B35 |
Chr7:58654914 |
TCG |
T |
2bp_deletion | CDS_variant | 1 | B35 |
Chr7:58654969 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr7:58654989 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B16,B91,C44,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776297.1PF00023
Ank 15-33 aa
PF12796
Ank_2 17-106 aa
PF13637
Ank_4 85-135 aa
PF12796
Ank_2 85-154 aa
PF13857
Ank_5 111-155 aa
PF00023
Ank 114-136 aa
PF13606
Ank_3 114-136 aa
PF13962
PGG 188-260 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776297.1 |
Pfam | PF00023 |
Ank | Repeat | 15 | 33 | 2.2e-19 | 69.2 | Ankyrin repeat |
XP_057776297.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 17 | 106 | 8.5e-21 | 75.1 | Ankyrin repeats (3 copies) |
XP_057776297.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 85 | 135 | 2.8e-17 | 63.1 | Ankyrin repeats (many copies) |
XP_057776297.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 85 | 154 | 8.5e-21 | 75.1 | Ankyrin repeats (3 copies) |
XP_057776297.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 111 | 155 | 6.4e-21 | 74.9 | Ankyrin repeats (many copies) |
XP_057776297.1 |
Pfam | PF00023 |
Ank | Repeat | 114 | 136 | 2.2e-19 | 69.2 | Ankyrin repeat |
XP_057776297.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 114 | 136 | 7.5e-18 | 63.3 | Ankyrin repeat |
XP_057776297.1 |
Pfam | PF13962 |
PGG | Domain | 188 | 260 | 3.7e-22 | 79.0 | Domain of unknown function |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。