当前解析结果
SmilChr07G004591| 统一新 Gene ID | SmilChr07G004591 |
|---|---|
| 名称 | SmilChr07G004591 |
| 描述 | ankyrin repeat-containing protein At5g02620-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 58707117 - 58708995 / - |
| NCBI Gene ID | LOC130995168 |
|---|---|
| GeneID | 130995168 |
| locus_tag | - |
| NCBI Name | LOC130995168 |
| 原始查询 | LOC130995168 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein At5g02620-like |
| 产物 | ankyrin repeat-containing protein At5g02620-like |
| Arabidopsis | AT4G10720 (AT4G10720)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:826666] identity=25.8; qcov=1.05; evalue=2.84e-28; confidence=low |
| Rice | Os11g0182900- identity=25.9; qcov=0.921; evalue=2.23e-27; confidence=low |
| GO | GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13962 (PGG) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995168 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057776301.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057776301.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057776301.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057776301.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057776301.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:58707156 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:58707231 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B140,B26 |
Chr7:58707286 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr7:58707295 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr7:58707342 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr7:58707474 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr7:58707515 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr7:58707534 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B109,B118,B58,B81 |
Chr7:58707537 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B15,B59 |
Chr7:58707608 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B11,C7 |
Chr7:58707608 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B11,C7 |
Chr7:58707636 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B11,C30 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776301.1PF12796
Ank_2 10-96 aa
PF12796
Ank_2 105-174 aa
PF00023
Ank 109-130 aa
PF00023
Ank 143-174 aa
PF13637
Ank_4 147-197 aa
PF00023
Ank 176-199 aa
PF13606
Ank_3 176-200 aa
PF13962
PGG 247-355 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776301.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 10 | 96 | 4.2e-30 | 104.9 | Ankyrin repeats (3 copies) |
XP_057776301.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 105 | 174 | 4.2e-30 | 104.9 | Ankyrin repeats (3 copies) |
XP_057776301.1 |
Pfam | PF00023 |
Ank | Repeat | 109 | 130 | 4.5e-24 | 83.9 | Ankyrin repeat |
XP_057776301.1 |
Pfam | PF00023 |
Ank | Repeat | 143 | 174 | 4.5e-24 | 83.9 | Ankyrin repeat |
XP_057776301.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 147 | 197 | 9.2e-23 | 80.5 | Ankyrin repeats (many copies) |
XP_057776301.1 |
Pfam | PF00023 |
Ank | Repeat | 176 | 199 | 4.5e-24 | 83.9 | Ankyrin repeat |
XP_057776301.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 176 | 200 | 3.2e-23 | 79.7 | Ankyrin repeat |
XP_057776301.1 |
Pfam | PF13962 |
PGG | Domain | 247 | 355 | 8e-20 | 71.5 | Domain of unknown function |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。