当前解析结果
SmilChr07G004593| 统一新 Gene ID | SmilChr07G004593 |
|---|---|
| 名称 | SmilChr07G004593 |
| 描述 | ankyrin repeat-containing protein ITN1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 58727250 - 58729146 / - |
| NCBI Gene ID | LOC130995169 |
|---|---|
| GeneID | 130995169 |
| locus_tag | - |
| NCBI Name | LOC130995169 |
| 原始查询 | LOC130995169 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein ITN1-like |
| 产物 | ankyrin repeat-containing protein ITN1-like |
| Arabidopsis | AT4G10720 (AT4G10720)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:826666] identity=24.7; qcov=1.07; evalue=1.63e-30; confidence=weak |
| Rice | Os11g0182900- identity=26.5; qcov=0.845; evalue=1.5e-29; confidence=low |
| GO | GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13962 (PGG) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995169 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057776302.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057776302.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057776302.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057776302.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057776302.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:58727488 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B78,C1,C82 |
Chr7:58727488 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B78,C1,C82 |
Chr7:58727510 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:58727512 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr7:58727564 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,B53,C34 |
Chr7:58727595 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | A18 |
Chr7:58727595 |
GC |
G |
1bp_deletion | CDS_variant | 1 | A18 |
Chr7:58727615 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:58727669 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:58727694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B78,C1,C82,D10 |
Chr7:58727717 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr7:58727762 |
G |
GA |
1bp_insertion | frameshift_variant | 27 | A18,A21,A24,B1,B101,B121,B127,B133,B16,B2,B34,B44,B47,B7,B80,B98,C1,C14,C27,C40,C42,C48,C55,C71,C8,C87,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776302.1PF12796
Ank_2 10-96 aa
PF12796
Ank_2 105-169 aa
PF00023
Ank 109-131 aa
PF00023
Ank 143-174 aa
PF13637
Ank_4 147-197 aa
PF00023
Ank 176-199 aa
PF13606
Ank_3 176-200 aa
PF13962
PGG 249-346 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776302.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 10 | 96 | 2.4e-29 | 102.5 | Ankyrin repeats (3 copies) |
XP_057776302.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 105 | 169 | 2.4e-29 | 102.5 | Ankyrin repeats (3 copies) |
XP_057776302.1 |
Pfam | PF00023 |
Ank | Repeat | 109 | 131 | 4.3e-23 | 80.8 | Ankyrin repeat |
XP_057776302.1 |
Pfam | PF00023 |
Ank | Repeat | 143 | 174 | 4.3e-23 | 80.8 | Ankyrin repeat |
XP_057776302.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 147 | 197 | 3.7e-23 | 81.8 | Ankyrin repeats (many copies) |
XP_057776302.1 |
Pfam | PF00023 |
Ank | Repeat | 176 | 199 | 4.3e-23 | 80.8 | Ankyrin repeat |
XP_057776302.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 176 | 200 | 5.8e-23 | 78.9 | Ankyrin repeat |
XP_057776302.1 |
Pfam | PF13962 |
PGG | Domain | 249 | 346 | 2.1e-18 | 66.9 | Domain of unknown function |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。