Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004602`

染色体: Chr07 坐标: 58829346-58832996 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004602`
名称	SmilChr07G004602
描述	ankyrin repeat-containing protein At5g02620-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	58829346 - 58832996 / `+`

ID 对照

NCBI Gene ID	`LOC130995175`
GeneID	`130995175`
locus_tag	`-`
NCBI Name	`LOC130995175`
原始查询	`LOC130995175`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein At5g02620-like
产物	ankyrin repeat-containing protein At5g02620-like
Arabidopsis	`AT5G51160` (AT5G51160) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:835190] identity=28.9; qcov=0.736; evalue=4.42e-30; confidence=low
Rice	`Os11g0182900` - identity=29.4; qcov=0.788; evalue=8.27e-32; confidence=low
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:130995175

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776310.1`
2	Nucleus	细胞核	0.00000	`XP_057776310.1`
3	Chromosome	染色体	0.00000	`XP_057776310.1`
4	Centromere	着丝粒	0.00000	`XP_057776310.1`
5	Chromatin	染色质	0.00000	`XP_057776310.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:58829489`	`CA`	`C`	1bp_deletion	frameshift_variant	10	B104,B12,B127,B134,B40,B58,B60,C58,C59,C62
`Chr7:58829497`	`A`	`ATC`	2bp_insertion	frameshift_variant	26	A25,A4,B103,B132,B19,B27,B37,B50,B52,B56,B59,B61,B69,B71,B9,B96,C22,C25,C3,C36,C4,C6,C62,C63,C73,C74
`Chr7:58829503`	`G`	`GAA`	2bp_insertion	frameshift_variant	98	A1,A13,A14,A21,A22,A25,A3,A4,A8,B100,B103,B105,B111,B112,B113,B119,B122,B123,B125,B129,B131,B132,B137,B139,B19,B21,B22,B23,B26,B28,B29,B3,B30,B31,B34,B35,B36,B37,B50,B52,B54,B59,B61,B65,B69,B71,B73,B75,B77,B78,B81,B82,B88,B9,B91,B92,B93,C11,C15,C17,C18,C20,C22,C23,C24,C25,C29,C3,C31,C33,C34,C36,C39,C4,C41,C45,C48,C49,C5,C50,C56,C6,C62,C63,C64,C66,C69,C70,C74,C76,C77,C79,C85,C86,C87,D10,D5,D9
`Chr7:58829505`	`A`	`AC`	1bp_insertion	frameshift_variant	39	A2,A23,A5,B100,B109,B11,B121,B131,B135,B14,B15,B16,B18,B25,B39,B41,B44,B46,B56,B58,B67,B72,B74,B90,B95,B99,C2,C21,C27,C36,C43,C58,C7,C78,C83,D11,D3,D6,D7
`Chr7:58829513`	`AG`	`A`	1bp_deletion	frameshift_variant	56	A2,A23,A24,A5,B100,B107,B109,B11,B121,B127,B131,B135,B136,B14,B15,B16,B18,B25,B33,B39,B40,B41,B44,B46,B58,B60,B67,B70,B72,B74,B90,B95,B98,B99,C12,C2,C21,C25,C27,C36,C42,C43,C48,C53,C55,C58,C62,C65,C7,C75,C78,C83,D11,D3,D6,D7
`Chr7:58829559`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C48
`Chr7:58829559`	`GC`	`G`	1bp_deletion	CDS_variant	1	C48
`Chr7:58829615`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C25
`Chr7:58829656`	`TAC`	`T`	2bp_deletion	frameshift_variant	1	C72
`Chr7:58829656`	`TAC`	`T`	2bp_deletion	CDS_variant	1	C72
`Chr7:58829674`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr7:58829676`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776310.1

466 aa

233

466

Ank_2

Ank

Ank_4

Ank_5

Ank_2

Ank

Ank_3

PGG

PF12796 Ank_2 24-110 aa PF00023 Ank 91-109 aa PF00023 Ank 123-143 aa PF13637 Ank_4 161-211 aa PF13857 Ank_5 182-231 aa PF12796 Ank_2 187-230 aa PF00023 Ank 190-212 aa PF13606 Ank_3 190-214 aa PF13962 PGG 265-372 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776310.1`	Pfam	`PF12796`	Ank_2	Repeat	24	110	2e-26	93.1	Ankyrin repeats (3 copies)
`XP_057776310.1`	Pfam	`PF00023`	Ank	Repeat	91	109	2.1e-20	72.4	Ankyrin repeat
`XP_057776310.1`	Pfam	`PF00023`	Ank	Repeat	123	143	2.1e-20	72.4	Ankyrin repeat
`XP_057776310.1`	Pfam	`PF13637`	Ank_4	Repeat	161	211	1.9e-22	79.5	Ankyrin repeats (many copies)
`XP_057776310.1`	Pfam	`PF13857`	Ank_5	Repeat	182	231	7.3e-18	65.2	Ankyrin repeats (many copies)
`XP_057776310.1`	Pfam	`PF12796`	Ank_2	Repeat	187	230	2e-26	93.1	Ankyrin repeats (3 copies)
`XP_057776310.1`	Pfam	`PF00023`	Ank	Repeat	190	212	2.1e-20	72.4	Ankyrin repeat
`XP_057776310.1`	Pfam	`PF13606`	Ank_3	Repeat	190	214	2.2e-18	64.9	Ankyrin repeat
`XP_057776310.1`	Pfam	`PF13962`	PGG	Domain	265	372	1.6e-22	80.2	Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920327.1
ATAGCAAGTCTTATTTTATACATCGCCAGGTTGTTGTAACAACTCTCGATTGAACTCTGTGTGCGCGTGTGTGTATGTGTGTGTGTGAATACATATATATATATATATATATGATGCAGCAAATCACAAGATTGTATGCAAAACAAAAAAGAAAAAAGAAGAGAGAGAGAGAGAATGGTTGGAGAAGCAGCAGCCGAAAAGAAACTATACGATGCTGCAACAAAGGGAGATGTGGCAACTTTCCAACAGCTGCTGCAACA...

CDS

1 records

下载 CDS FASTA

LOC130995175
ATGCAAAACAAAAAAGAAAAAAGAAGAGAGAGAGAGAGAATGGTTGGAGAAGCAGCAGCCGAAAAGAAACTATACGATGCTGCAACAAAGGGAGATGTGGCAACTTTCCAACAGCTGCTGCAACAAGATCCACACCTTGTTGAAAGTGTTTCATTTGCATGTTCAAGAAATGTTGTACACATAGCAACACTGCGGGGGCAAGTAGCCATGGTTGAAGAGGTGTTGAACATCAACCCGCAGCTAGCTCGATATTTGGACTC...

Protein

1 records

下载 Protein FASTA

XP_057776310.1
MQNKKEKRRERERMVGEAAAEKKLYDAATKGDVATFQQLLQQDPHLVESVSFACSRNVVHIATLRGQVAMVEEVLNINPQLARYLDSQKSSPLHIAAAQGNVEIAKKLLSVAPEMCWWIDDQGMNPVHIAAMKGHDEVLKEMLQLDLLPAMERLHRGQTVLHLCVKHRRLSTLKVSVEKLGELVYAKDDDGETLLHLAVRSNQLEMVQYLVENNKMKKLTENSMGKTALDILEECAPHTSTTSEMKRILLNLSNQQKSLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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