Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004600`

染色体: Chr07 坐标: 58780132-58803849 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004600`
名称	SmilChr07G004600
描述	ankyrin repeat-containing protein At5g02620-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	58780132 - 58803849 / `+`

ID 对照

NCBI Gene ID	`LOC130995177`
GeneID	`130995177`
locus_tag	`-`
NCBI Name	`LOC130995177`
原始查询	`LOC130995177`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein At5g02620-like
产物	ankyrin repeat-containing protein At5g02620-like
Arabidopsis	`AT5G51160` (AT5G51160) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:835190] identity=28.4; qcov=0.784; evalue=5.47e-26; confidence=low
Rice	`Os11g0182900` - identity=30; qcov=0.858; evalue=6.98e-30; confidence=low
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:130995177

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776313.1`
2	Nucleus	细胞核	0.00000	`XP_057776313.1`
3	Chromosome	染色体	0.00000	`XP_057776313.1`
4	Centromere	着丝粒	0.00000	`XP_057776313.1`
5	Chromatin	染色质	0.00000	`XP_057776313.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:58780313`	`G`	`GAA`	2bp_insertion	frameshift_variant	6	B119,B61,C3,C38,C4,D10
`Chr7:58780364`	`GTC`	`G`	2bp_deletion	frameshift_variant	6	B111,B12,B55,B57,C23,C56
`Chr7:58780412`	`G`	`GCA`	2bp_insertion	frameshift_variant	1	B136
`Chr7:58780412`	`G`	`GCA`	2bp_insertion	CDS_variant	1	B136
`Chr7:58780415`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B88,C17,C79
`Chr7:58780442`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr7:58780453`	`AAC`	`A`	2bp_deletion	frameshift_variant	1	B22
`Chr7:58780453`	`AAC`	`A`	2bp_deletion	CDS_variant	1	B22
`Chr7:58780459`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B78
`Chr7:58780477`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr7:58780518`	`ACG`	`A`	2bp_deletion	frameshift_variant	1	B22
`Chr7:58780518`	`ACG`	`A`	2bp_deletion	CDS_variant	1	B22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776313.1

431 aa

216

431

Ank_2

Ank_4

Ank_2

Ank

Ank_4

Ank

Ank_4

Ank_5

Ank

Ank_3

PGG

PF12796 Ank_2 11-97 aa PF13637 Ank_4 80-130 aa PF12796 Ank_2 109-169 aa PF00023 Ank 111-130 aa PF13637 Ank_4 114-164 aa PF00023 Ank 144-175 aa PF13637 Ank_4 148-198 aa PF13857 Ank_5 170-218 aa PF00023 Ank 177-199 aa PF13606 Ank_3 177-201 aa PF13962 PGG 252-358 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776313.1`	Pfam	`PF12796`	Ank_2	Repeat	11	97	5.2e-29	101.4	Ankyrin repeats (3 copies)
`XP_057776313.1`	Pfam	`PF13637`	Ank_4	Repeat	80	130	2.5e-21	75.9	Ankyrin repeats (many copies)
`XP_057776313.1`	Pfam	`PF12796`	Ank_2	Repeat	109	169	5.2e-29	101.4	Ankyrin repeats (3 copies)
`XP_057776313.1`	Pfam	`PF00023`	Ank	Repeat	111	130	3.7e-21	74.7	Ankyrin repeat
`XP_057776313.1`	Pfam	`PF13637`	Ank_4	Repeat	114	164	2.5e-21	75.9	Ankyrin repeats (many copies)
`XP_057776313.1`	Pfam	`PF00023`	Ank	Repeat	144	175	3.7e-21	74.7	Ankyrin repeat
`XP_057776313.1`	Pfam	`PF13637`	Ank_4	Repeat	148	198	2.5e-21	75.9	Ankyrin repeats (many copies)
`XP_057776313.1`	Pfam	`PF13857`	Ank_5	Repeat	170	218	1.3e-19	70.8	Ankyrin repeats (many copies)
`XP_057776313.1`	Pfam	`PF00023`	Ank	Repeat	177	199	3.7e-21	74.7	Ankyrin repeat
`XP_057776313.1`	Pfam	`PF13606`	Ank_3	Repeat	177	201	1.5e-20	71.6	Ankyrin repeat
`XP_057776313.1`	Pfam	`PF13962`	PGG	Domain	252	358	5.5e-23	81.7	Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920330.1
AGACAAAGAAACATTTTTATAGCGAGTCTTATTTTAATGCGTGTGTGTGTGTGAATATACATATATATATCATATACTATACTATGCATGAGTTCGCAAATCACAAATTAACTTGTATGTAAAAAAGAGGCGAAAAAGGAAAAATCTGAAAACGCCATTAATAAAGTTGGAAAGAATGGTTGGAGAAGCAGCAGCAGAAAAGAAACTATACGATGCTGCAACAAAGGGAGATGTCGCAACTTTCCAAGTGCTGCTGCAAC...

CDS

1 records

下载 CDS FASTA

LOC130995177
ATGGTTGGAGAAGCAGCAGCAGAAAAGAAACTATACGATGCTGCAACAAAGGGAGATGTCGCAACTTTCCAAGTGCTGCTGCAACAAGATCCACATCTTGTTGATGAGGTTTCATACGCACGTTCAAGAAACCTTCTACATATAGCAACGATGCGTGGACAAGTGGGCATCGTGGAAGAGGTGTTGAAGATGAACTCAGAGCTAGCTCGAGACGTTGACTCCAAAAAGTCGTCATCTCTTCACATCGCAGCTGCACAAGG...

Protein

1 records

下载 Protein FASTA

XP_057776313.1
MVGEAAAEKKLYDAATKGDVATFQVLLQQDPHLVDEVSYARSRNLLHIATMRGQVGIVEEVLKMNSELARDVDSKKSSSLHIAAAQGHAEIAKKLLSVAPEACWWRDCHDMNPIHVAAMNGHEEALKVLLEVSHIPAMERLHRGQTVLHLCVKHGQLTTLKVLVEKLGELVYAKDDDGETLLHLAVRCNQLVMVQYLVESNKIEKLTPNSMGKTALDISKECSPPTTTNSEMKRILQSLLIKQRSLKSHLKINDMTMVVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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